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Report for Sequence Feature Glyma.03g196600

Feature Type:gene_model
Chromosome:Gm03
Start:40625298
stop:40629202
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g196600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G57790.1AT F-box family protein JGI N/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0031146GO-bp SCF-dependent proteasomal ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PF00646PFAM F-box domain JGI N/AIEA

Expression Patterns of Glyma.03g196600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03g196600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g35440 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g196600
>Glyma.03g196600.2 sequence-type=transcript locus=Glyma.03g196600 ID=Glyma.03g196600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAAAAAATGTAGCACAAGATACCATGATGGGACATGGGTGTAGAGGCGGGCGTGGAAGCGTTCACACGAAGCAACTCCGTTCTTCAGCCTCTCAAACGCAACTTCATTATCCAATTGCCTTCGCAAAATGTCGGGGAAGCGAAAGAGGAAGTTGAAATTGTTAAGCGATGCAATCACAGATAATAGAAGAAAAACAGTTGCTGAGGTGAAAACTGAAAATTTGGAGCTGCAATCCTGGGCTGATCTCCCTGCTGAACTCTTAGAATCGATCTTGTCCCGATTGATTCTAGTGGATAACATCCGGGCTTCTTCTGTTTGCAAGAGATGGCATTCTGTTGCCAGTGATGTACGTGTAGTAAACCAATCACCATGGCTTATGTATTTTCCAAAATTCGGTGACTGTTATGAATTCTATGACCCTGTGCAGCATAAGACACTCACCTTCGAGTTGCCAGAGTTGAATGGATCTAGAGTTTGTTATACAAAAGATGGTTGGTTATTGCTATACCGGCCCAGAACTCACCGAGTATTCTTCTTTAATCCCTTTACTCGGGAGCTGATCAAACTGCCAAGATTTGAGATGACATACCAGATTGTGGCCTTCTCTTGTGCTCCAACATCACCTGGCTGTGTTCTGTTTACTGTTAAGCATGTTAGTCCTACTGTTGTAGCTATTAGCACTTGTTATCCTGGGGCAACAGAATGGACCACTGTTAATTACCAAAACCGCTTGCCCTTTGTCAGTAGCATTTGGAATAAGCTTGTGTTTTGTAATGGGCTATTTTATTGTCTGAGCCTCACAGGTTGGCTTGGTGTGTTTGATCCAGTTGAATGTACTTGGAGTGTTCTGGCAGTACCTCCACCCAAATGCCCAGAGAACTTTTTTGCCAAAAACTGGTGGAAGGGAAAATTTATGGCAGAGCATGAAGGAGATATATTAGTAATTTATACATGCTGTAGTGAAAATCCCATTATTTTTAAGTTAGATCAGACATTAATGAAATGGGAAGAGATGACAACACTAGATGGGGTAACTCTTTTTGCTAGTTTTTTGTCATCTCATTCAAGGACTGACCTCATTGGAATAATGAGGAACAGTGTCTACTTCTCCAAAGTTCGTTTCTATGGAAAGCGTTGCATATCATTCTCTCTTGGTGACTATAGATACTATCCCCGTAAACAGTGTCATGACTGGGGAGAGCACGACCCTTTTGAGAACATCTGGATTGAGCCACCAAAGGACTTTTCAGCTTGCATGTGAAGAATTTTAGTGAAACAACATTTTTTATTCATCCTAAAGTCCTAATGCAGAACATGTGAATATTTGGAAGCATTGCTACGTTTGCAGTCTGCATGTAGGAGGCTACTATATGCATAAAATGGAAGTTACATGTGAAGGAATGGACCTCTGTAAGAGGGAACCGAAAAGATTTGCCTCCTTGGTTGTCTTTGCAGATCCTGGGACTTTAAGATTTTTTGCCCAGCACAGCAGAAGACATTAGAGTTTATACTGATCTAGAGATTTATTGATTATTATCTTGGGCATGATCCATATATGTAGGAATGGACATCTGTAAAAGGGAAGCGAAAAAGACTTTGCTTCCTTGGCCATTTTGTCTTTGCAGATCCTGAAATATTTAAGATTTTTTTGCCCCAACACAACGGGGCTTATGCAGAACATTAGAGTTTATGCTAATAAAGAGATTTATTAATTATTATTTTGGG

>Glyma.03g196600.3 sequence-type=transcript locus=Glyma.03g196600 ID=Glyma.03g196600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAAAAAATGTAGCACAAGATACCATGATGGGACATGGGTGTAGAGGCGGGCGTGGAAGCGTTCACACGAAGCAACTCCGTTCTTCAGCCTCTCAAACGCAACTTCATTATCCAATTGCCTTCGCAAAATGTCGGGGAAGCGAAAGAGGAAGTTGAAATTATAATAGAAGAAAAACAGTTGCTGAGGTGAAAACTGAAAATTTGGAGCTGCAATCCTGGGCTGATCTCCCTGCTGAACTCTTAGAATCGATCTTGTCCCGATTGATTCTAGTGGATAACATCCGGGCTTCTTCTGTTTGCAAGAGATGGCATTCTGTTGCCAGTGATGTACGTGTAGTAAACCAATCACCATGGCTTATGTATTTTCCAAAATTCGGTGACTGTTATGAATTCTATGACCCTGTGCAGCATAAGACACTCACCTTCGAGTTGCCAGAGTTGAATGGATCTAGAGTTTGTTATACAAAAGATGGTTGGTTATTGCTATACCGGCCCAGAACTCACCGAGTATTCTTCTTTAATCCCTTTACTCGGGAGCTGATCAAACTGCCAAGATTTGAGATGACATACCAGATTGTGGCCTTCTCTTGTGCTCCAACATCACCTGGCTGTGTTCTGTTTACTGTTAAGCATGTTAGTCCTACTGTTGTAGCTATTAGCACTTGTTATCCTGGGGCAACAGAATGGACCACTGTTAATTACCAAAACCGCTTGCCCTTTGTCAGTAGCATTTGGAATAAGCTTGTGTTTTGTAATGGGCTATTTTATTGTCTGAGCCTCACAGGTTGGCTTGGTGTGTTTGATCCAGTTGAATGTACTTGGAGTGTTCTGGCAGTACCTCCACCCAAATGCCCAGAGAACTTTTTTGCCAAAAACTGGTGGAAGGGAAAATTTATGGCAGAGCATGAAGGAGATATATTAGTAATTTATACATGCTGTAGTGAAAATCCCATTATTTTTAAGTTAGATCAGACATTAATGAAATGGGAAGAGATGACAACACTAGATGGGGTAACTCTTTTTGCTAGTTTTTTGTCATCTCATTCAAGGACTGACCTCATTGGAATAATGAGGAACAGTGTCTACTTCTCCAAAGTTCGTTTCTATGGAAAGCGTTGCATATCATTCTCTCTTGGTGACTATAGATACTATCCCCGTAAACAGTGTCATGACTGGGGAGAGCACGACCCTTTTGAGAACATCTGGATTGAGCCACCAAAGGACTTTTCAGCTTGCATGTGAAGAATTTTAGTGAAACAACATTTTTTATTCATCCTAAAGTCCTAATGCAGAACATGTGAATATTTGGAAGCATTGCTACGTTTGCAGTCTGCATGTAGGAGGCTACTATATGCATAAAATGGAAGTTACATGTGAAGGAATGGACCTCTGTAAGAGGGAACCGAAAAGATTTGCCTCCTTGGTTGTCTTTGCAGATCCTGGGACTTTAAGATTTTTTGCCCAGCACAGCAGAAGACATTAGAGTTTATACTGATCTAGAGATTTATTGATTATTATCTTGGGCATGATCCATATATGTAGGAATGGACATCTGTAAAAGGGAAGCGAAAAAGACTTTGCTTCCTTGGCCATTTTGTCTTTGCAGATCCTGAAATATTTAAGATTTTTTTGCCCCAACACAACGGGGCTTATGCAGAACATTAGAGTTTATGCTAATAAAGAGATTTATTAATTATTATTTTGGG
Coding sequences of Glyma.03g196600
>Glyma.03g196600.1 sequence-type=CDS polypeptide=Glyma.03g196600.1.p locus=Glyma.03g196600 ID=Glyma.03g196600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGGGGAAGCGAAAGAGGAAGTTGAAATTGTTAAGCGATGCAATCACAGATAATAGAAGAAAAACAGTTGCTGAGGTGAAAACTGAAAATTTGGAGCTGCAATCCTGGGCTGATCTCCCTGCTGAACTCTTAGAATCGATCTTGTCCCGATTGATTCTAGTGGATAACATCCGGGCTTCTTCTGTTTGCAAGAGATGGCATTCTGTTGCCAGTGATGTACGTGTAGTAAACCAATCACCATGGCTTATGTATTTTCCAAAATTCGGTGACTGTTATGAATTCTATGACCCTGTGCAGCATAAGACACTCACCTTCGAGTTGCCAGAGTTGAATGGATCTAGAGTTTGTTATACAAAAGATGGTTGGTTATTGCTATACCGGCCCAGAACTCACCGAGTATTCTTCTTTAATCCCTTTACTCGGGAGCTGATCAAACTGCCAAGATTTGAGATGACATACCAGATTGTGGCCTTCTCTTGTGCTCCAACATCACCTGGCTGTGTTCTGTTTACTGTTAAGCATGTTAGTCCTACTGTTGTAGCTATTAGCACTTGTTATCCTGGGGCAACAGAATGGACCACTGTTAATTACCAAAACCGCTTGCCCTTTGTCAGTAGCATTTGGAATAAGCTTGTGTTTTGTAATGGGCTATTTTATTGTCTGAGCCTCACAGGTTGGCTTGGTGTGTTTGATCCAGTTGAATGTACTTGGAGTGTTCTGGCAGTACCTCCACCCAAATGCCCAGAGAACTTTTTTGCCAAAAACTGGTGGAAGGGAAAATTTATGGCAGAGCATGAAGGAGATATATTAGTAATTTATACATGCTGTAGTGAAAATCCCATTATTTTTAAGTTAGATCAGACATTAATGAAATGGGAAGAGATGACAACACTAGATGGGGTAACTCTTTTTGCTAGTTTTTTGTCATCTCATTCAAGGACTGACCTCATTGGAATAATGAGGAACAGTGTCTACTTCTCCAAAGTTCGTTTCTATGGAAAGCGTTGCATATCATTCTCTCTTGGTGACTATAGATACTATCCCCGTAAACAGTGTCATGACTGGGGAGAGCACGACCCTTTTGAGAACATCTGGATTGAGCCACCAAAGGACTTTTCAGCTTGCATGTGA

>Glyma.03g196600.2 sequence-type=CDS polypeptide=Glyma.03g196600.2.p locus=Glyma.03g196600 ID=Glyma.03g196600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGGGGAAGCGAAAGAGGAAGTTGAAATTGTTAAGCGATGCAATCACAGATAATAGAAGAAAAACAGTTGCTGAGGTGAAAACTGAAAATTTGGAGCTGCAATCCTGGGCTGATCTCCCTGCTGAACTCTTAGAATCGATCTTGTCCCGATTGATTCTAGTGGATAACATCCGGGCTTCTTCTGTTTGCAAGAGATGGCATTCTGTTGCCAGTGATGTACGTGTAGTAAACCAATCACCATGGCTTATGTATTTTCCAAAATTCGGTGACTGTTATGAATTCTATGACCCTGTGCAGCATAAGACACTCACCTTCGAGTTGCCAGAGTTGAATGGATCTAGAGTTTGTTATACAAAAGATGGTTGGTTATTGCTATACCGGCCCAGAACTCACCGAGTATTCTTCTTTAATCCCTTTACTCGGGAGCTGATCAAACTGCCAAGATTTGAGATGACATACCAGATTGTGGCCTTCTCTTGTGCTCCAACATCACCTGGCTGTGTTCTGTTTACTGTTAAGCATGTTAGTCCTACTGTTGTAGCTATTAGCACTTGTTATCCTGGGGCAACAGAATGGACCACTGTTAATTACCAAAACCGCTTGCCCTTTGTCAGTAGCATTTGGAATAAGCTTGTGTTTTGTAATGGGCTATTTTATTGTCTGAGCCTCACAGGTTGGCTTGGTGTGTTTGATCCAGTTGAATGTACTTGGAGTGTTCTGGCAGTACCTCCACCCAAATGCCCAGAGAACTTTTTTGCCAAAAACTGGTGGAAGGGAAAATTTATGGCAGAGCATGAAGGAGATATATTAGTAATTTATACATGCTGTAGTGAAAATCCCATTATTTTTAAGTTAGATCAGACATTAATGAAATGGGAAGAGATGACAACACTAGATGGGGTAACTCTTTTTGCTAGTTTTTTGTCATCTCATTCAAGGACTGACCTCATTGGAATAATGAGGAACAGTGTCTACTTCTCCAAAGTTCGTTTCTATGGAAAGCGTTGCATATCATTCTCTCTTGGTGACTATAGATACTATCCCCGTAAACAGTGTCATGACTGGGGAGAGCACGACCCTTTTGAGAACATCTGGATTGAGCCACCAAAGGACTTTTCAGCTTGCATGTGA

>Glyma.03g196600.3 sequence-type=CDS polypeptide=Glyma.03g196600.3.p locus=Glyma.03g196600 ID=Glyma.03g196600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATTTTCCAAAATTCGGTGACTGTTATGAATTCTATGACCCTGTGCAGCATAAGACACTCACCTTCGAGTTGCCAGAGTTGAATGGATCTAGAGTTTGTTATACAAAAGATGGTTGGTTATTGCTATACCGGCCCAGAACTCACCGAGTATTCTTCTTTAATCCCTTTACTCGGGAGCTGATCAAACTGCCAAGATTTGAGATGACATACCAGATTGTGGCCTTCTCTTGTGCTCCAACATCACCTGGCTGTGTTCTGTTTACTGTTAAGCATGTTAGTCCTACTGTTGTAGCTATTAGCACTTGTTATCCTGGGGCAACAGAATGGACCACTGTTAATTACCAAAACCGCTTGCCCTTTGTCAGTAGCATTTGGAATAAGCTTGTGTTTTGTAATGGGCTATTTTATTGTCTGAGCCTCACAGGTTGGCTTGGTGTGTTTGATCCAGTTGAATGTACTTGGAGTGTTCTGGCAGTACCTCCACCCAAATGCCCAGAGAACTTTTTTGCCAAAAACTGGTGGAAGGGAAAATTTATGGCAGAGCATGAAGGAGATATATTAGTAATTTATACATGCTGTAGTGAAAATCCCATTATTTTTAAGTTAGATCAGACATTAATGAAATGGGAAGAGATGACAACACTAGATGGGGTAACTCTTTTTGCTAGTTTTTTGTCATCTCATTCAAGGACTGACCTCATTGGAATAATGAGGAACAGTGTCTACTTCTCCAAAGTTCGTTTCTATGGAAAGCGTTGCATATCATTCTCTCTTGGTGACTATAGATACTATCCCCGTAAACAGTGTCATGACTGGGGAGAGCACGACCCTTTTGAGAACATCTGGATTGAGCCACCAAAGGACTTTTCAGCTTGCATGTGA
Predicted protein sequences of Glyma.03g196600
>Glyma.03g196600.1.p sequence-type=predicted peptide transcript=Glyma.03g196600.1 locus=Glyma.03g196600 ID=Glyma.03g196600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGKRKRKLKLLSDAITDNRRKTVAEVKTENLELQSWADLPAELLESILSRLILVDNIRASSVCKRWHSVASDVRVVNQSPWLMYFPKFGDCYEFYDPVQHKTLTFELPELNGSRVCYTKDGWLLLYRPRTHRVFFFNPFTRELIKLPRFEMTYQIVAFSCAPTSPGCVLFTVKHVSPTVVAISTCYPGATEWTTVNYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPVECTWSVLAVPPPKCPENFFAKNWWKGKFMAEHEGDILVIYTCCSENPIIFKLDQTLMKWEEMTTLDGVTLFASFLSSHSRTDLIGIMRNSVYFSKVRFYGKRCISFSLGDYRYYPRKQCHDWGEHDPFENIWIEPPKDFSACM*

>Glyma.03g196600.2.p sequence-type=predicted peptide transcript=Glyma.03g196600.2 locus=Glyma.03g196600 ID=Glyma.03g196600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGKRKRKLKLLSDAITDNRRKTVAEVKTENLELQSWADLPAELLESILSRLILVDNIRASSVCKRWHSVASDVRVVNQSPWLMYFPKFGDCYEFYDPVQHKTLTFELPELNGSRVCYTKDGWLLLYRPRTHRVFFFNPFTRELIKLPRFEMTYQIVAFSCAPTSPGCVLFTVKHVSPTVVAISTCYPGATEWTTVNYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPVECTWSVLAVPPPKCPENFFAKNWWKGKFMAEHEGDILVIYTCCSENPIIFKLDQTLMKWEEMTTLDGVTLFASFLSSHSRTDLIGIMRNSVYFSKVRFYGKRCISFSLGDYRYYPRKQCHDWGEHDPFENIWIEPPKDFSACM*

>Glyma.03g196600.3.p sequence-type=predicted peptide transcript=Glyma.03g196600.3 locus=Glyma.03g196600 ID=Glyma.03g196600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYFPKFGDCYEFYDPVQHKTLTFELPELNGSRVCYTKDGWLLLYRPRTHRVFFFNPFTRELIKLPRFEMTYQIVAFSCAPTSPGCVLFTVKHVSPTVVAISTCYPGATEWTTVNYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPVECTWSVLAVPPPKCPENFFAKNWWKGKFMAEHEGDILVIYTCCSENPIIFKLDQTLMKWEEMTTLDGVTLFASFLSSHSRTDLIGIMRNSVYFSKVRFYGKRCISFSLGDYRYYPRKQCHDWGEHDPFENIWIEPPKDFSACM*






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