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Report for Sequence Feature Glyma.03g194500

Feature Type:gene_model
Chromosome:Gm03
Start:40508841
stop:40512126
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g194500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G26820.1AT ribonuclease 3 JGI N/AIEA
GO:0090502GO-bp RNA phosphodiester bond hydrolysis, endonucleolytic EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0033897GO-mf ribonuclease T2 activity EnsemblGenomesN/AIEA
GO:0033897GO-mf ribonuclease T2 activity JGI N/AIEA
KOG1642 KOG Ribonuclease, T2 family JGI N/AIEA
PTHR11240Panther RIBONUCLEASE T2 JGI N/AIEA
PTHR11240:SF1Panther RIBONUCLEASE T2 JGI N/AIEA
PF00445PFAM Ribonuclease T2 family JGI N/AIEA

Expression Patterns of Glyma.03g194500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03g194500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g35230 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g194500
>Glyma.03g194500.1 sequence-type=CDS polypeptide=Glyma.03g194500.1.p locus=Glyma.03g194500 ID=Glyma.03g194500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCACAACTAAGAATGTACCCTCTTATGATATGTGTTTTCTCTTTGGTGTTGGTTCTAAATGTACCTATCTCGTTTGCTTCTTATGACTTTTTTATGTTGTCTGAAACATGGCCAGCAACCTACTGTGGAATTAAAAATCGTTTGTTACCATGTGCCAAACAACCAAACACATTCACTATCCATGGACTATGGCCACAAAATCATATTGGTCCTCAGCCAGCATCATGCAGCAACCTCCAAAAGGATAAATTCGATAAAAGAATTATCACTTCTTCCTTGAAGTCAGCACTTGAGACAGGTTGGCCAAATTTAAACACACAAAACGATATGAGATTTTGGGTGACAGAGTGGGACAAACACGGGACTTGTTCATTGAACAAGTTCTCCCAATTTAATTATTTTCGTCTGGCGTTGAAAATCAAGGGAGAGTATAATCTAATGACTATCCTTTCTGGAGAACAAATTGTCCCGCATCATTCAACCGCATATGATAAAAACTCCATAATCCAAGCAATACATGGAGTTATTGACACATACCCTCAACTTACTTGTTATAAATATAACTTGAATAAACAATCATATTACAATCTTTCTGAAATAAGACTATGTTTAGACGACAATGGAAAGAACTACATAAATTGTCCTACTCCTACCACAAACTGTAATGGCAACATGTTATATTGGCCAATATAA
Predicted protein sequences of Glyma.03g194500
>Glyma.03g194500.1.p sequence-type=predicted peptide transcript=Glyma.03g194500.1 locus=Glyma.03g194500 ID=Glyma.03g194500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSQLRMYPLMICVFSLVLVLNVPISFASYDFFMLSETWPATYCGIKNRLLPCAKQPNTFTIHGLWPQNHIGPQPASCSNLQKDKFDKRIITSSLKSALETGWPNLNTQNDMRFWVTEWDKHGTCSLNKFSQFNYFRLALKIKGEYNLMTILSGEQIVPHHSTAYDKNSIIQAIHGVIDTYPQLTCYKYNLNKQSYYNLSEIRLCLDDNGKNYINCPTPTTNCNGNMLYWPI*






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