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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G36310.1 | AT | uridine-ribohydrolase 1 | JGI | N/A | IEA |
| GO:0006152 | GO-bp | purine nucleoside catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0008477 | GO-mf | purine nucleosidase activity | EnsemblGenomes | N/A | IEA |
| KOG2938 | KOG | Predicted inosine-uridine preferring nucleoside hydrolase | JGI | N/A | IEA |
| PTHR12304 | Panther | INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE | JGI | N/A | IEA |
| PF01156 | PFAM | Inosine-uridine preferring nucleoside hydrolase | JGI | N/A | IEA |
| P165-PWY | SoyCyc9 | superpathway of purines degradation in plants | Plant Metabolic Network | ISS | |
| PWY-5043 | SoyCyc9 | purine nucleosides salvage II (plant) | Plant Metabolic Network | ISS | |
| PWY-5044 | SoyCyc9 | purine nucleotides degradation I (plants) | Plant Metabolic Network | ISS | |
| PWY-6556 | SoyCyc9 | pyrimidine ribonucleosides salvage II | Plant Metabolic Network | ISS | |
| PWY-6595 | SoyCyc9 | superpathway of guanosine nucleotides degradation (plants) | Plant Metabolic Network | ISS | |
| PWY-6596 | SoyCyc9 | adenosine nucleotides degradation I | Plant Metabolic Network | ISS | |
| PWY-6605 | SoyCyc9 | adenine and adenosine salvage II | Plant Metabolic Network | ISS | |
| PWY-6607 | SoyCyc9 | guanosine nucleotides degradation I | Plant Metabolic Network | ISS | |
| PWY-7196 | SoyCyc9 | superpathway of pyrimidine ribonucleosides salvage | Plant Metabolic Network | ISS | |
| PWYQT-4445 | SoyCyc9 | pyrimidine salvage pathway | Plant Metabolic Network | ISS | |
| GN7V-61839 | SoyCyc9-rxn | purine nucleosidase | Plant Metabolic Network | ISS |
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Glyma.03g193800 not represented in the dataset |
Glyma.03g193800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.19g193700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma03g35166 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g193800.1 sequence-type=CDS polypeptide=Glyma.03g193800.1.p locus=Glyma.03g193800 ID=Glyma.03g193800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCATTCTTATGGCTTTTCAAAGTCCAGATGTGGAGGTTCTGGGTTTGACAACCATTTTTGGTAATACAACTACCGAACTTTCAACACTCAATGCTTTGCTTTTGTGTGAGATGGCAGGCCGTGAAGATATTCCAGTTGCACAGGGAAGCCATGAGCCATTGAAGGGTGGAAAGCCTCGTGTTGCTGATTTTGTTCATGGTAAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGGTGAGAAAATTGAGAAAAGTGCTAGTGAGTTTTTGGTAGAGAAAGTCTCTGAATATCCTGGTGAAGTATCTGTGCTAGCACTTGGACCACTAACAAATTTGGCTTTGGCAATCAAAAGGGATTCTTCCTTTGCAAGCAAAGTGAAGAGAATAGTTATACTTGGTGGTGCATTCTTTGCCTTGGGGAATGTGAATCCTGCTGCAGAAGCCAATATCCATGGAGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATATTGTTGTTATTGGAATAAACATTACAACCCAAGTCCAATTCACAGATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCTTGAGTGACATATGCAAATTCTATAGGGACTTTCATGTAAAATCTGATGGTGTCCACGGAATTTTCCTCCACGATCCTGTAAGTTTTGTGGCAGTTGTGCGTCCAGATCTTTTCACATACAAGAAGGGGGTAGTGAGGGTAGAAACACAAGGCATCTGTGTTGGGCATACACTTATGGACCAAGGATTGAAAAAGTTTGTCCAAATTTACAACTACTATTATTATGCACTTTTTTTTTGTTAA
>Glyma.03g193800.1.p sequence-type=predicted peptide transcript=Glyma.03g193800.1 locus=Glyma.03g193800 ID=Glyma.03g193800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAILMAFQSPDVEVLGLTTIFGNTTTELSTLNALLLCEMAGREDIPVAQGSHEPLKGGKPRVADFVHGKDGLGNTFLPPPKGEKIEKSASEFLVEKVSEYPGEVSVLALGPLTNLALAIKRDSSFASKVKRIVILGGAFFALGNVNPAAEANIHGDPEAADIVFTSGADIVVIGINITTQVQFTDADLLELKESKGKYAPFLSDICKFYRDFHVKSDGVHGIFLHDPVSFVAVVRPDLFTYKKGVVRVETQGICVGHTLMDQGLKKFVQIYNYYYYALFFC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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