Glyma.03g192100

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Report for Sequence Feature Glyma.03g192100

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40291397
stop:	40293514
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.03g192100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36410.2	AT	Family of unknown function (DUF662)	JGI	N/A	IEA
AT2G36410.3	AT	Family of unknown function (DUF662)	JGI	N/A	IEA
PTHR21470	Panther	NTKL-BINDING PROTEIN 1	JGI	N/A	IEA
PF04949	PFAM	Transcriptional activator	JGI	N/A	IEA

Expression Patterns of Glyma.03g192100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g192100 not represented in the dataset	Glyma.03g192100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.03g192100

Paralog	Evidence	Comments
Glyma.19g192600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g192100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma03g35000	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.03g192100

Limit To All Plant Sequences

>Glyma.03g192100.2 sequence-type=transcript locus=Glyma.03g192100 ID=Glyma.03g192100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTGATATTGTATTAATTTTAGGAATAGAAAGTAAATGTTTGGTCCATAAAGGCAAAGGGGGCAACCCAGATAACATAAGAAGCGCACTCGCAACAGGGGAGGAAGCAGAGCACTGCAGCCTCATCATTTCAAGGCCAACACaaagcagagaaagcaaaaaagaaaaaaaagcaaagagagagagagagataataaagagaaaaaactgaaggaagaagaaagGGTTTGTTTGTGTGAAAGAAAGAGAAAGAGAGGATGCAGAGTGAGAACCAGAACAACCAGTTGGTGGTGCAGAATTCGGGGAGCCTGAGCTTCAGCAGCCATTTGTCGAAGGAAGACGAAGAGATGTCAAGGTCTGCTCTCTCCACCTTCAGAGCCAAGGAGGAAGAGATTGAAAGGAAGAAGATGGAGGTCAGAGAAAAGGTTCAGCTTCAGTTAGGTCGAGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCACTTGTTCGAAAAAGAATTGATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACCTGCCAGAAGAAGGAGAAAGAATACAAAGACGCCCTTGAAGCTTTCAATGAAAAGAACAGGGAAAAAGTACAGCTAATCACCAAGTTAATGGAGTTGGTGGGTGAAAGTGAAAGATTGAGGATGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATTCGATGCAATGATTTAGCCAAACTGCTAATGACTCCTGATTAGCCTTGTGTGGTATATTAAAGATGATGACATAGTATATTTTTATATGTATGGGTGTTTTGTTTTGTGCTTGTGTAATTTTGTGGTGTTGATGTTTGTTTAACTAGCATTTGATGGGACAATCAGCTAATTTAGGAGGGCTATATACCCTACAAACAGCCAGGCTTGTAACTAAATACTTGCATTTTGTTGTCATTTTTTCTCCCCTTCAATTCACTTTTCTTTGGCTTTGTTCACCttaatttaatttattgatgtaatttgaatttTGTTGCCACGAAGGATGGTTCCAACAAAGTCCTGGTGTGTTTTGCTTTTAGTTCAATGATTTACCATTATAATTGAAT

>Glyma.03g192100.3 sequence-type=transcript locus=Glyma.03g192100 ID=Glyma.03g192100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTGATATTGTATTAATTTTAGGAATAGAAAGTAAATGTTTGGTCCATAAAGGCAAAGGGGGCAACCCAGATAACATAAGAAGCGCACTCGCAACAGGGGAGGAAGCAGAGCACTGCAGCCTCATCATTTCAAGGCCAACACaaagcagagaaagcaaaaaagaaaaaaaagcaaagagagagagagagataataaagagaaaaaactgaaggaagaagaaagGGTTTGTTTGTGTGAAAGAAAGAGAAAGAGAGGATGCAGAGTGAGAACCAGAACAACCAGTTGGTGGTGCAGAATTCGGGGAGCCTGAGCTTCAGCAGCCATTTGTCGAAGGAAGACGAAGAGATGTCAAGGTCTGCTCTCTCCACCTTCAGAGCCAAGGAGGAAGAGATTGAAAGGAAGAAGATGGAGGTCAGAGAAAAGGTTCAGCTTCAGTTAGGTCGAGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCACTTGTTCGAAAAAGAATTGATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACCTGCCAGAAGAAGGTGAAGTTTATTGAATTTCTCAGAAAACCATTAATACTCGGTTGAATAACATGTTATAAAGTGCCGAATTATACGGACCGTGACATGTTATTGGGTACACCATTGAGATTGGGTTTTTGATTATGCATTTCAGGAGAAAGAATACAAAGACGCCCTTGAAGCTTTCAATGAAAAGAACAGGGAAAAAGTACAGCTAATCACCAAGTTAATGGAGTTGGTGGGTGAAAGTGAAAGATTGAGGATGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATTCGATGCAATGATTTAGCCAAACTGCTAATGACTCCTGATTAGCCTTGTGTGGTATATTAAAGATGATGACATAGTATATTTTTATATGTATGGGTGTTTTGTTTTGTGCTTGTGTAATTTTGTGGTGTTGATGTTTGTTTAACTAGCATTTGATGGGACAATCAGCTAATTTAGGAGGGCTATATACCCTACAAACAGCCAGGCTTGTAACTAAATACTTGCATTTTGTTGTCATTTTTTCTCCCCTTCAATTCACTTTTCTTTGGCTTTGTTCACCttaatttaatttattgatgtaatttgaatttTGTTGCCACGAAGGATGGTTCCAACAAAGTCCTGGTGTGTTTTGCTTTTAGTTCAATGATTTACCATTATAATTGAAT

Coding sequences of Glyma.03g192100

Limit To All Plant Sequences

>Glyma.03g192100.1 sequence-type=CDS polypeptide=Glyma.03g192100.1.p locus=Glyma.03g192100 ID=Glyma.03g192100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGAGTGAGAACCAGAACAACCAGTTGGTGGTGCAGAATTCGGGGAGCCTGAGCTTCAGCAGCCATTTGTCGAAGGAAGACGAAGAGATGTCAAGGTCTGCTCTCTCCACCTTCAGAGCCAAGGAGGAAGAGATTGAAAGGAAGAAGATGGAGGTCAGAGAAAAGGTTCAGCTTCAGTTAGGTCGAGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAGGAATATCAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCACTTGTTCGAAAAAGAATTGATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACCTGCCAGAAGAAGGAGAAAGAATACAAAGACGCCCTTGAAGCTTTCAATGAAAAGAACAGGGAAAAAGTACAGCTAATCACCAAGTTAATGGAGTTGGTGGGTGAAAGTGAAAGATTGAGGATGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATTCGATGCAATGA

>Glyma.03g192100.2 sequence-type=CDS polypeptide=Glyma.03g192100.2.p locus=Glyma.03g192100 ID=Glyma.03g192100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGAGTGAGAACCAGAACAACCAGTTGGTGGTGCAGAATTCGGGGAGCCTGAGCTTCAGCAGCCATTTGTCGAAGGAAGACGAAGAGATGTCAAGGTCTGCTCTCTCCACCTTCAGAGCCAAGGAGGAAGAGATTGAAAGGAAGAAGATGGAGGTCAGAGAAAAGGTTCAGCTTCAGTTAGGTCGAGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCACTTGTTCGAAAAAGAATTGATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACCTGCCAGAAGAAGGAGAAAGAATACAAAGACGCCCTTGAAGCTTTCAATGAAAAGAACAGGGAAAAAGTACAGCTAATCACCAAGTTAATGGAGTTGGTGGGTGAAAGTGAAAGATTGAGGATGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATTCGATGCAATGA

>Glyma.03g192100.3 sequence-type=CDS polypeptide=Glyma.03g192100.3.p locus=Glyma.03g192100 ID=Glyma.03g192100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGAGTGAGAACCAGAACAACCAGTTGGTGGTGCAGAATTCGGGGAGCCTGAGCTTCAGCAGCCATTTGTCGAAGGAAGACGAAGAGATGTCAAGGTCTGCTCTCTCCACCTTCAGAGCCAAGGAGGAAGAGATTGAAAGGAAGAAGATGGAGGTCAGAGAAAAGGTTCAGCTTCAGTTAGGTCGAGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCACTTGTTCGAAAAAGAATTGATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACCTGCCAGAAGAAGGTGAAGTTTATTGAATTTCTCAGAAAACCATTAATACTCGGTTGA

Predicted protein sequences of Glyma.03g192100

Limit To All Plant Sequences

>Glyma.03g192100.1.p sequence-type=predicted peptide transcript=Glyma.03g192100.1 locus=Glyma.03g192100 ID=Glyma.03g192100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQSENQNNQLVVQNSGSLSFSSHLSKEDEEMSRSALSTFRAKEEEIERKKMEVREKVQLQLGRVEEETKRLATIREEYQELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKKEKEYKDALEAFNEKNREKVQLITKLMELVGESERLRMKKLEELSKNIDSMQ*

>Glyma.03g192100.2.p sequence-type=predicted peptide transcript=Glyma.03g192100.2 locus=Glyma.03g192100 ID=Glyma.03g192100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQSENQNNQLVVQNSGSLSFSSHLSKEDEEMSRSALSTFRAKEEEIERKKMEVREKVQLQLGRVEEETKRLATIREELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKKEKEYKDALEAFNEKNREKVQLITKLMELVGESERLRMKKLEELSKNIDSMQ*

>Glyma.03g192100.3.p sequence-type=predicted peptide transcript=Glyma.03g192100.3 locus=Glyma.03g192100 ID=Glyma.03g192100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQSENQNNQLVVQNSGSLSFSSHLSKEDEEMSRSALSTFRAKEEEIERKKMEVREKVQLQLGRVEEETKRLATIREELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKKVKFIEFLRKPLILG*

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