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Report for Sequence Feature Glyma.03g191300

Feature Type:gene_model
Chromosome:Gm03
Start:40211543
stop:40213012
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g191300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03700.1AT D-mannose binding lectin protein with Apple-like carbohydrate-binding domain JGI N/AIEA
GO:0048544GO-bp recognition of pollen EnsemblGenomesN/AIEA
GO:0048544GO-bp recognition of pollen JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
PTHR11795Panther UNCHARACTERIZED JGI N/AIEA
PTHR11795:SF323Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF00024PFAM PAN domain JGI N/AIEA
PF00954PFAM S-locus glycoprotein family JGI N/AIEA
PF01453PFAM D-mannose binding lectin JGI N/AIEA

Expression Patterns of Glyma.03g191300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g191300
ParalogEvidenceComments
Glyma.19g192000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g191300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g34930 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g191300
>Glyma.03g191300.1 sequence-type=CDS polypeptide=Glyma.03g191300.1.p locus=Glyma.03g191300 ID=Glyma.03g191300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGCAAACTCGTCACCCCCAATTTCTAGCGATTATTCCCTTTCTCTTTTTATATACTTTGACATGCTCCGAAACCGCAACAACCACTTCCATCCCACAAGAGCTTCACATAGGCTTCTCGGCGACGGCAGAGTCTTCAACGACGCCGTTTCAGGCAGTTCTGAGCGACCATAGTGGCAACTTCTCTCTAGGCTTCCTCCGCGTGAACCAAAACCAGCTGGCACTGGCGGTCCTCCACGTGGCATCCTCGGAGCCATTCTGGGTGGCCAACCCAACCCACGCAGCATCCTGGTCCGACACCACGCGCCTCTTCTTCAACGGCAGTCTTGTTTTGTCAGACCCCGAAACGCGCGTTTCGTGGTCAACCGCCACAAACAACGGCGACCGCGTGGTGCTCCTCAACACCTCCAATTTACAAGTTCACGACAAAGGCGGCACTCCCTTGTGGCAGAGTTTTCACTTTCCCGCAAATACCCTCGTCCAGGACCAGAATTTCACCTCCAACATGACTCTTTTGTCCTCCAACGGCATTTATTCTATGCGGTTAGGCAACGATTTCATGGGCCTATACGAAAACCACGACTCGTTATATTGGAAACGCACGCCACTGGGAGCAAAAGCGGAAGTAAAGGAAGGGCAGGGACCGATTTACGCCCGAGTCAACCCGGAGGGTTACCTCGGGATGTATCAGACAAGCGACGAGAAGCCCGCGGATGTTCAAAAGTTCAACACGTTCCAACTAACGTCGTCGTTTTTGTTGCTGCGGTTGGAACCGGACGGGAATCTGAAGGGTTATTACTGGGACGGTTCCAGGTGGATGCTTAACTACCAGGCGATTACTGAAGCCTGCGAGCTCCCCCGCTCCTGCGGTTCGTACGGTTTGTGCACGCCGGGTGGGTCAGGATGCTCCTGTTTAGATAACCGAACCCGGTTCGAACCGGGTGGGTGTTTTAATGATGCTTCTTCTGGAGACGCAGACTTGTGTAGTAGTGAAGGAATTGGTGGAAAAAGTAGTTACTGGGTGCTAAGAAGAACCGGAGTGGAGGCAGCGCATAAGGAGCTACTAAGGCACGTAACGACGTCGTCTCTGGCGGAGTGTGAGGGATTGTGCCAGAACAACTGTAGCTGTTGGGGGGCGCTGTATAGCAACGAAACCGGGTTTTGTTATTTGTTGGAGTATACGATCCAGACCTTGCTGGGTACCGGGGATGGATCAAAAGTGGGTTATTTCAAGGTTAAGAAAGAGGAACGAAGAACGAAACGGGTTTGGATACGGGTTGGGGTTGTGGTTACGGTTTTGGTTGGGGTTGGGGTTATTATTATTGGGGTCGGGTTTTGCGTGACGAGATGGAAAAAGAAGAGAGGGGTGAAGGAAGAGGATTGGGGTTCGCCCGGCCCGTATAAGAATCTCGAATCCGCAAGTTTTAGATCCATTGAAATGAGCAATAGTAACAGTGCCAACGAATGA
Predicted protein sequences of Glyma.03g191300
>Glyma.03g191300.1.p sequence-type=predicted peptide transcript=Glyma.03g191300.1 locus=Glyma.03g191300 ID=Glyma.03g191300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLQTRHPQFLAIIPFLFLYTLTCSETATTTSIPQELHIGFSATAESSTTPFQAVLSDHSGNFSLGFLRVNQNQLALAVLHVASSEPFWVANPTHAASWSDTTRLFFNGSLVLSDPETRVSWSTATNNGDRVVLLNTSNLQVHDKGGTPLWQSFHFPANTLVQDQNFTSNMTLLSSNGIYSMRLGNDFMGLYENHDSLYWKRTPLGAKAEVKEGQGPIYARVNPEGYLGMYQTSDEKPADVQKFNTFQLTSSFLLLRLEPDGNLKGYYWDGSRWMLNYQAITEACELPRSCGSYGLCTPGGSGCSCLDNRTRFEPGGCFNDASSGDADLCSSEGIGGKSSYWVLRRTGVEAAHKELLRHVTTSSLAECEGLCQNNCSCWGALYSNETGFCYLLEYTIQTLLGTGDGSKVGYFKVKKEERRTKRVWIRVGVVVTVLVGVGVIIIGVGFCVTRWKKKRGVKEEDWGSPGPYKNLESASFRSIEMSNSNSANE*






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