Report for Sequence Feature Glyma.03g190700
Feature Type: gene_model
Chromosome: Gm03
Start: 40130752
stop: 40136041
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.03g190700
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G03740.1 AT
histone deacetylase 2C
JGI N/A IEA
AT5G22650.2 AT
histone deacetylase 2B
JGI N/A IEA
GO:0003676 GO-mf
nucleic acid binding
EnsemblGenomes N/A IEA
Proteins Associated with Glyma.03g190700
Locus Gene Symbol Protein Name
HDT1 histone deacetylase HDT1-like
Expression Patterns of Glyma.03g190700
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.03g190700
Paralog Evidence Comments
Glyma.19g191000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.03g190700 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma03g34850 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.03g190700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.03g190700.2 sequence-type=transcript locus=Glyma.03g190700 ID=Glyma.03g190700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAAACATAAAAAATAAATAATTTGTTCAAATTCAAAAAATAATAATACCAGTATATACGGAGCGGATCCCTATACAAATTCATTCGATCAAATACTCAGAACTGTTCGGTTTTTCTGGAAATTTTTCTTCTCTCAGCCATCTCTCTCTCTCTCTGCGTCCATGGAGTTTTGGGGTGTTGAGGTGAAAAGTGGAGAATCTCTCAAGGTTGATCCGGGAGATGACAAGATTATCCACCTTTCAAATGCATGCCTGGGGGATGTCACTAAGGATAAAGAAGGTCTACCAGTAGCCCTGTATGTCAAGTTTGGTAACCAAAAGCTTGTACTTGGAACGCTTTCTTCTGAAGCTTTTCCTCAGATATCTTATGATTTGGTATTTGAGAAGGAATTTGAGCTATCCCATAACTGGAAACATGGAAGTGTCTTCTTTACCGGATTTAAAGCTCAATCTCAGTCAGAGTCTGATAATGATGAAGATTCTGATGATTTTGATGAAGATATTCCAGTTAGTGCTGCCAATGGTAAACCTGAGATTGAGGTGAAGAATGGCATCAAACCTGATGCAAATGAAGCTAAACAGAAGAAGATAGCAAATGGTGAAGATGAAGATTCATCCGAATCTGAATCTGATGATGATTCAAGTGAAGATCAGATAGCAAGAATGTTGTCCATGTTGCAACTCCTCACCCTTCTAAGCAGACTGGTAAAGCAACTGCTAATAACAAGCAGCAGACTCCGAAGTCAGGTGGAGATTACAGCTGCAAGCCTTGCAACAGGTCATTTAAGACAGAAGATGCCTTAAGTTCTCATAACAAGGCCAAGCACAGCACTAAGTGAAGGCTTGCTTTTTGCCCGAGCAGTGACAGTGAGTGTTGATGTTTCTGGTGTTGGATGATTGTGTGAAAAAACAGTTTAGTTGATGTAGGAAAGCTGGGCTTAGTGATTTTCAACTTTGATTGGATCAACTTGAGTTTGTGGTAACTGCGCTTTGACCTTGATCCCATGTCGGCCTTCTTTCAACCGAATCTCTTTGTGATGAAATGCGTAAATACTCCCTGCAACTCATGAAATAAGTATTCCTGACTAAGTCAACTGGGATTTAACGTTGCTAAACCATCAACTAATTGGGAGCTTTTTTTATCACTTTTGTTTGTATATTTCCAATCTTCAACCAATTTTTGTTTAATGACTTTTATTAACAATTGGAAAATATTAAAGCTTTAAATAGTGCC
Coding sequences of Glyma.03g190700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.03g190700.1 sequence-type=CDS polypeptide=Glyma.03g190700.1.p locus=Glyma.03g190700 ID=Glyma.03g190700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGTTTTGGGGTGTTGAGGTGAAAAGTGGAGAATCTCTCAAGGTTGATCCGGGAGATGACAAGATTATCCACCTTTCAAATGCATGCCTGGGGGATGTCACTAAGGATAAAGAAGGTCTACCAGTAGCCCTGTATGTCAAGTTTGGTAACCAAAAGCTTGTACTTGGAACGCTTTCTTCTGAAGCTTTTCCTCAGATATCTTATGATTTGGTATTTGAGAAGGAATTTGAGCTATCCCATAACTGGAAACATGGAAGTGTCTTCTTTACCGGATTTAAAGCTCAATCTCAGTCAGAGTCTGATAATGATGAAGATTCTGATGATTTTGATGAAGATATTCCAGTTAGTGCTGCCAATGGTAAACCTGAGATTGAGGTGAAGAATGGCATCAAACCTGATGCAAATGAAGCTAAACAGAAGAAGATAGCAAATGGTGAAGATGAAGATTCATCCGAATCTGAATCTGATGATGATTCAAGTGAAGATCAGCTCACAGCGAATGGTGACATAGAAAGTAGTGAAGGTGATGATGATAGCGATGATGAGGAGGAGGGGGACGATGAATCTGATGAGGAGACACCCAAGAAGATTGAAGCAAGCAATAAGAGGGGTATTGACTCTTCTAAGAAAACACCTGTTCCTGTGAAGAAGACAAAATTTGTTACTCCTCAGAAGACTGATAGCAAGAATGTTGTCCATGTTGCAACTCCTCACCCTTCTAAGCAGACTGGTAAAGCAACTGCTAATAACAAGCAGCAGACTCCGAAGTCAGGTGGAGATTACAGCTGCAAGCCTTGCAACAGGTCATTTAAGACAGAAGATGCCTTAAGTTCTCATAACAAGGCCAAGCACAGCACTAAGTGA
>Glyma.03g190700.2 sequence-type=CDS polypeptide=Glyma.03g190700.2.p locus=Glyma.03g190700 ID=Glyma.03g190700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGTTTTGGGGTGTTGAGGTGAAAAGTGGAGAATCTCTCAAGGTTGATCCGGGAGATGACAAGATTATCCACCTTTCAAATGCATGCCTGGGGGATGTCACTAAGGATAAAGAAGGTCTACCAGTAGCCCTGTATGTCAAGTTTGGTAACCAAAAGCTTGTACTTGGAACGCTTTCTTCTGAAGCTTTTCCTCAGATATCTTATGATTTGGTATTTGAGAAGGAATTTGAGCTATCCCATAACTGGAAACATGGAAGTGTCTTCTTTACCGGATTTAAAGCTCAATCTCAGTCAGAGTCTGATAATGATGAAGATTCTGATGATTTTGATGAAGATATTCCAGTTAGTGCTGCCAATGGTAAACCTGAGATTGAGGTGAAGAATGGCATCAAACCTGATGCAAATGAAGCTAAACAGAAGAAGATAGCAAATGGTGAAGATGAAGATTCATCCGAATCTGAATCTGATGATGATTCAAGTGAAGATCAGATAGCAAGAATGTTGTCCATGTTGCAACTCCTCACCCTTCTAAGCAGACTGGTAAAGCAACTGCTAATAACAAGCAGCAGACTCCGAAGTCAGGTGGAGATTACAGCTGCAAGCCTTGCAACAGGTCATTTAAGACAGAAGATGCCTTAA
Predicted protein sequences of Glyma.03g190700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.03g190700.1.p sequence-type=predicted peptide transcript=Glyma.03g190700.1 locus=Glyma.03g190700 ID=Glyma.03g190700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEFWGVEVKSGESLKVDPGDDKIIHLSNACLGDVTKDKEGLPVALYVKFGNQKLVLGTLSSEAFPQISYDLVFEKEFELSHNWKHGSVFFTGFKAQSQSESDNDEDSDDFDEDIPVSAANGKPEIEVKNGIKPDANEAKQKKIANGEDEDSSESESDDDSSEDQLTANGDIESSEGDDDSDDEEEGDDESDEETPKKIEASNKRGIDSSKKTPVPVKKTKFVTPQKTDSKNVVHVATPHPSKQTGKATANNKQQTPKSGGDYSCKPCNRSFKTEDALSSHNKAKHSTK*
>Glyma.03g190700.2.p sequence-type=predicted peptide transcript=Glyma.03g190700.2 locus=Glyma.03g190700 ID=Glyma.03g190700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEFWGVEVKSGESLKVDPGDDKIIHLSNACLGDVTKDKEGLPVALYVKFGNQKLVLGTLSSEAFPQISYDLVFEKEFELSHNWKHGSVFFTGFKAQSQSESDNDEDSDDFDEDIPVSAANGKPEIEVKNGIKPDANEAKQKKIANGEDEDSSESESDDDSSEDQIARMLSMLQLLTLLSRLVKQLLITSSRLRSQVEITAASLATGHLRQKMP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
