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Report for Sequence Feature Glyma.03g190500

Feature Type:gene_model
Chromosome:Gm03
Start:40120464
stop:40124965
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g190500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36530.1AT Enolase JGI N/AIEA
GO:0006096GO-bp glycolytic process EnsemblGenomesN/AIEA
GO:0006096GO-bp glycolysis JGI N/AIEA
GO:0000015GO-cc phosphopyruvate hydratase complex EnsemblGenomesN/AIEA
GO:0000015GO-cc phosphopyruvate hydratase complex JGI N/AIEA
GO:0000287GO-mf magnesium ion binding EnsemblGenomesN/AIEA
GO:0000287GO-mf magnesium ion binding JGI N/AIEA
GO:0004634GO-mf phosphopyruvate hydratase activity EnsemblGenomesN/AIEA
GO:0004634GO-mf phosphopyruvate hydratase activity JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG2670 KOG Enolase JGI N/AIEA
PTHR11902Panther ENOLASE JGI N/AIEA
PF00113PFAM Enolase, C-terminal TIM barrel domain JGI N/AIEA
PF03952PFAM Enolase, N-terminal domain JGI N/AIEA
GLUCONEO-PWYSoyCyc9 gluconeogenesis I Plant Metabolic Network ISS
GLYCOLYSISSoyCyc9 glycolysis I (from glucose 6-phosphate) Plant Metabolic Network ISS
PWY-1042SoyCyc9 glycolysis IV (plant cytosol) Plant Metabolic Network ISS
PWY-5464SoyCyc9 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Plant Metabolic Network ISS
PWY-5484SoyCyc9 glycolysis II (from fructose 6-phosphate) Plant Metabolic Network ISS
PWY-5723SoyCyc9 Rubisco shunt Plant Metabolic Network ISS
PWY-7345SoyCyc9 superpathway of anaerobic sucrose degradation Plant Metabolic Network ISS
GN7V-47221SoyCyc9-rxn phosphopyruvate hydratase Plant Metabolic Network ISS

Expression Patterns of Glyma.03g190500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g190500
ParalogEvidenceComments
Glyma.19g190900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g190500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g34830 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g190500
>Glyma.03g190500.1 sequence-type=CDS polypeptide=Glyma.03g190500.1.p locus=Glyma.03g190500 ID=Glyma.03g190500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACCATTGTTAGCATCAAGGCCCGCCAGATCTTTGACAGTCGTGGCAATCCAACCGTCGAGGTGGATTTGACATGCTCCGATGGTACTTTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACTGGGATTTATGAGGCCCTTGAATTGAGAGATGGAGGATCTGACTACCTTGGAAAGGGTGTATCAAAGGCTGTTGACAATGTGAACACCATTATTGCCCCTGCTTTGGTTGGCAAGGACCCAACTCAGCAGACTGCTATTGACAACTTAATGGTTCAACAACTTGATGGAACTGTTAACGAATGGGGTTGGTGCAAGCAAAAGCTTGGAGCAAATGCCATATTGGCAGTGTCTCTTGCAGTCTGCAAAGCTGGTGCTGCTGTCCTGAAAGTTCCTCTTTACAAGCATATTGCAAATATTGCGGGTAACAAAAAGTTGGTTTTGCCTGTTCCTGCTTTCAATGTCATTAATGGTGGATCACATGCTGGAAACAAACTTGCTATGCAGGAGTTTATGGTTCTTCCCGTGGGAGCTTCCTCTTTCAAGGAAGCCATGAAGATGGGTGTAGAAGTATATCACAATTTGAAGTCTGTGATTAAGAAGAAATATGGTCAAGATGCAGTAAATGTTGGTGACGAAGGTGGCTTTGCCCCTAACATCCAGGAAAACAAGGAAGGTTTGGAATTGCTGAAAACTGCCATTGCCAAAGCTGGTTACACAGGCAAAGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGATAAAACATACGATTTGAACTTCAAGGAAGATAACAATGATGGCTCACAGAAGATCTCTGGAGATGCTTTGAAAGATCTATACAAGTCATTTGTGACAGAGTATCCAATTGTTTCAATTGAGGATCCTTTTGACCAGGATGACTGGGAGCACTATGCTAAGCTTACTGCTGAGGTTGGAACCAATGTACAAATTGTTGGTGATGATCTCTTGGTTACCAACCCCAAGAGGGTTCAGAAGGCAATTGATACAAAAGCATGCAATGCTCTTCTCCTTAAGGTCAACCAAATTGGTTCTGTGACTGAGAGTATTGAAGCTGTCAGGATGTCCAAAAAAGCTGGATGGGGTGTCATGGCGAGTCACAGAAGTGGAGAGACTGAGGATACCTTCATTGCTGACCTTTCTGTTGGTTTGGCAACGGGTCAAATTAAGACTGGAGCTCCATGCAGGTCAGAGCGTCTTGCTAAATATAACCAGCTCTTGAGAATTGAGGAGGAGCTTGGTGCGGAAGCAGTGTATGCTGGAGCTAACTTCCGTACCCCTGTTGAGCCCTACTAA
Predicted protein sequences of Glyma.03g190500
>Glyma.03g190500.1.p sequence-type=predicted peptide transcript=Glyma.03g190500.1 locus=Glyma.03g190500 ID=Glyma.03g190500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATIVSIKARQIFDSRGNPTVEVDLTCSDGTFARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVDNVNTIIAPALVGKDPTQQTAIDNLMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAAVLKVPLYKHIANIAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMVLPVGASSFKEAMKMGVEVYHNLKSVIKKKYGQDAVNVGDEGGFAPNIQENKEGLELLKTAIAKAGYTGKVVIGMDVAASEFYKEDKTYDLNFKEDNNDGSQKISGDALKDLYKSFVTEYPIVSIEDPFDQDDWEHYAKLTAEVGTNVQIVGDDLLVTNPKRVQKAIDTKACNALLLKVNQIGSVTESIEAVRMSKKAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGANFRTPVEPY*






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