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Report for Sequence Feature Glyma.03g188600

Feature Type:gene_model
Chromosome:Gm03
Start:39965955
stop:39972069
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g188600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G03910.1AT JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG2370 KOG Cactin JGI N/AIEA
PTHR21737Panther POLYGLUTAMINE BINDING PROTEIN 1/MARVEL (MEMBRANE-ASSOCIATING) DOMAIN CONTAINING 3 JGI N/AIEA
PTHR21737:SF4Panther CACTIN JGI N/AIEA
PF09732PFAM Cactus-binding C-terminus of cactin protein JGI N/AIEA
PF10312PFAM Conserved mid region of cactin JGI N/AIEA

Expression Patterns of Glyma.03g188600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g188600
ParalogEvidenceComments
Glyma.19g188800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g188600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g34590 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g188600
>Glyma.03g188600.2 sequence-type=transcript locus=Glyma.03g188600 ID=Glyma.03g188600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAATTAAGAAGAAAAATACTAACGCGTGGGAAGATTGAATGAAGAGTTTGTGGAGGTTTGGAACTAACAGGGCCGACATAACACAGTTCTCCTTTCTCTGAATTTTTCGTTAGAGAATGGGGAAGAGTAGCGGAAGAGACCGAAGACGAAGAAGATCACATgactctgaatccgactcaccttccgattccgactccgacAGACGCCACCGTAGCAATAGTCGCCGGTCGCGGCGGGACTCCGATGGCGACAGGAAGAAGAAGTCCTCGAAGtctgaatccgagtcgccttccgattccgactccgacATACGCCACCGTAGTAGCAGCCGCCGGTCGTGGCGGGACTCCGACGGCGATAGGAAGAAGTCCTCGAGGAGCATCACAGAAGAGGAAATTACAAAGTACATGGCCAGAAAGGCCCAATCGAAGGCAATGAAAGTAGCGAAAAAGTTGAAAACCAGTACGGTATCGGGCTATTCCAACGATTCGAATCCGTTTGGTGACTCTAATCTCAACGAGAAATAAGTAGTGGTCGCTCATATGCCAGATCTATATAGATTATAAACCTACACAAATGTTATTTATAGGTTTGTCTGGCGCAAGAAGATTGAGCGCGATGTTTCACAAGGTGTGTCTATTGATGCGTTTTCAATGAAGGCAGAGAAAAAGAAACAGAGAGAAAGGATGGCAGAAATTGAAAAAGTAAAAAAGAGAAGAGAGGAAAGGGCACTTGAGAAAGCAAGGCACGAGGAAGAAATGGCACTGTTAGCCAGAGAGCGTGCTCGAGCTGAGTTTCAGGACTGGGAAAAAAAAGAAGAGGAGTTTCATTTTGATCAAAGCAAAGTTAGGTCAGAAATTAGATTGCGTGAAGGGCGTGCCAGACCCATCGATGTCCTAACCAAGCATCTCAATGGCTCTGATGATTTGGATATAGAAATAAATGAACCATACATGGTCTTCAAGGGTTTGACTGTGAACGAAATGAGTGAGCTACGTGACGACATCAAAATGCATCTAGACCTTGACAGGGCAACACCAACTCATGTAGAATATTGGGAGGCACTCCTTCTGGTTTGTGATTGGGAGCTAGCTGAAGCTCAAAGAAAGGATGCACTTGATCGAGCTAGGGTGCGTGGAGAAGAACCTCCTGCTGAGCTGCTTGCAGAAGAAAGGGGTCTGCATTCCAGTGTTGAGCCAGATGTGAAGAGGCTTTTGCAGGGGAAGACACTTGCAGAGTTGGAGGCTTTACGGGTTCACATTGAATCAGAAATGCGTACTGGTACAGCAAAGGTGGTTGAGTACTGGGAGGCCATTTTAAAACATCTCCACATTTATAAGGCCAAGGCTTGTTTAAAGGAAATTCATGCTAAATTGCTACGTAAGCATTTGCAATCTCTTGAGAGACCATTGGAGGATGAAGATAAATTGGAGAATGCTCATGTTATGATACCTGAGGAGGAAGATACTGAAGATGATATTAAAGTCCAATCTGCAGATGAATCATTCTCACCAGAGCCCATTAGAGAGGATCAAGAAGCTGATGATGAGGCTGGATCATTTTCACCACAACTGTTGCACGGTGATGAAAATGCGGAAGCTATTGACCCAGAAGAAGATAGAGCCATGCTGGAGCGGAATCGTAAGGCTGTATTAGAAGAGCAGCAAAGACGAGTTCAGGAAGCAATGGCATCAAAGCCAACTCCTTCTGAAGATCATTTTGAGATGAAGGCCTTAAAAGCTATGGGGGATATGGAAGATGGAGACTCTGTGTTTGGATCTGGTGCTGAAGTGAATCTGGATTCCCAGGTTTATTGGTGGCATGACAAATACAGGCCTAGGAAGCCGAAGTATTTCAACCGTGTTCACACTGGATATGAGTGGAACAAATATAATCAGACTCACTATGATCATGACAACCCACCTCCAAAGATAGTCCAAGGGTACAAATTTAATATTTTCTACCCTGATCTTGTAGACAAGACAAAAGCCCCAACCTACACCATTGAGAAGGATGGCAGCAATGGGGAGACTTGCATTATAAGATTCCACGCAGGGCCACCATATGAAGACATAGCTTTCCGCATTGTTAACAAAGAATGGGAGTATTCTCATAAGAAAGGTTTTAAGTGTGCATTTGAACGTGGAATTCTGCATGTGTACTTCAATTTCAAACGCCACCGCTACCGAAGATAATTTCACACAAGGCAATGGTTCACTTTCTGTAAAATTTCCCCTAATAGAAAGGCTATGGACTGCAATTTTTAGAGTAAATTTTATTTGATGGTGTTGACACTAGAGATAGATGGCCAGGAATTTTTTACAGCTTAGATTGAGACCAAGAAGAAATTCTAAGGTACTATCAGAGTGATACTCCCACCGGTTAAAGTTTGATCTAAATCTTGTCATATGATATTTTAAATTTAGTTTTAAGGAGATAGTATGGTTATGCTGTTCTCATCTACTGATTATGTTTTTGATGGATTGAGTATAGTACTCCTGTGCATAAGAATATGGATACCCAGGGTGATTCCAAATGCTGAGATACTAATTACATGTCTTTTCTTTTTTTAGTGTACACACTAATCTCAATTCTGTGAATCCTGGCTGGATTATCTAGACTTTCTTTTGCTATTGGAGACTATCAAATTGTCCAACTGTTTCTTTAGCAAAAGTTTATTTATTGTTCTTTTGACGATAGTTTTCATCTCACAAGGTGAAAGAATTCATGGTTG
Coding sequences of Glyma.03g188600
>Glyma.03g188600.1 sequence-type=CDS polypeptide=Glyma.03g188600.1.p locus=Glyma.03g188600 ID=Glyma.03g188600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAAGAGTAGCGGAAGAGACCGAAGACGAAGAAGATCACATGACTCTGAATCCGACTCACCTTCCGATTCCGACTCCGACAGACGCCACCGTAGCAATAGTCGCCGGTCGCGGCGGGACTCCGATGGCGACAGGAAGAAGAAGTCCTCGAAGTCTGAATCCGAGTCGCCTTCCGATTCCGACTCCGACATACGCCACCGTAGTAGCAGCCGCCGGTCGTGGCGGGACTCCGACGGCGATAGGAAGAAGTCCTCGAGGAGCATCACAGAAGAGGAAATTACAAAGTACATGGCCAGAAAGGCCCAATCGAAGGCAATGAAAGTAGCGAAAAAGTTGAAAACCAGTACGGTATCGGGCTATTCCAACGATTCGAATCCGTTTGGTGACTCTAATCTCAACGAGAAGTTTGTCTGGCGCAAGAAGATTGAGCGCGATGTTTCACAAGGTGTGTCTATTGATGCGTTTTCAATGAAGGCAGAGAAAAAGAAACAGAGAGAAAGGATGGCAGAAATTGAAAAAGTAAAAAAGAGAAGAGAGGAAAGGGCACTTGAGAAAGCAAGGCACGAGGAAGAAATGGCACTGTTAGCCAGAGAGCGTGCTCGAGCTGAGTTTCAGGACTGGGAAAAAAAAGAAGAGGAGTTTCATTTTGATCAAAGCAAAGTTAGGTCAGAAATTAGATTGCGTGAAGGGCGTGCCAGACCCATCGATGTCCTAACCAAGCATCTCAATGGCTCTGATGATTTGGATATAGAAATAAATGAACCATACATGGTCTTCAAGGGTTTGACTGTGAACGAAATGAGTGAGCTACGTGACGACATCAAAATGCATCTAGACCTTGACAGGGCAACACCAACTCATGTAGAATATTGGGAGGCACTCCTTCTGGTTTGTGATTGGGAGCTAGCTGAAGCTCAAAGAAAGGATGCACTTGATCGAGCTAGGGTGCGTGGAGAAGAACCTCCTGCTGAGCTGCTTGCAGAAGAAAGGGGTCTGCATTCCAGTGTTGAGCCAGATGTGAAGAGGCTTTTGCAGGGGAAGACACTTGCAGAGTTGGAGGCTTTACGGGTTCACATTGAATCAGAAATGCGTACTGGTACAGCAAAGGTGGTTGAGTACTGGGAGGCCATTTTAAAACATCTCCACATTTATAAGGCCAAGGCTTGTTTAAAGGAAATTCATGCTAAATTGCTACGTAAGCATTTGCAATCTCTTGAGAGACCATTGGAGGATGAAGATAAATTGGAGAATGCTCATGTTATGATACCTGAGGAGGAAGATACTGAAGATGATATTAAAGTCCAATCTGCAGATGAATCATTCTCACCAGAGCCCATTAGAGAGGATCAAGAAGCTGATGATGAGGCTGGATCATTTTCACCACAACTGTTGCACGGTGATGAAAATGCGGAAGCTATTGACCCAGAAGAAGATAGAGCCATGCTGGAGCGGAATCGTAAGGCTGTATTAGAAGAGCAGCAAAGACGAGTTCAGGAAGCAATGGCATCAAAGCCAACTCCTTCTGAAGATCATTTTGAGATGAAGGCCTTAAAAGCTATGGGGGATATGGAAGATGGAGACTCTGTGTTTGGATCTGGTGCTGAAGTGAATCTGGATTCCCAGGTTTATTGGTGGCATGACAAATACAGGCCTAGGAAGCCGAAGTATTTCAACCGTGTTCACACTGGATATGAGTGGAACAAATATAATCAGACTCACTATGATCATGACAACCCACCTCCAAAGATAGTCCAAGGGTACAAATTTAATATTTTCTACCCTGATCTTGTAGACAAGACAAAAGCCCCAACCTACACCATTGAGAAGGATGGCAGCAATGGGGAGACTTGCATTATAAGATTCCACGCAGGGCCACCATATGAAGACATAGCTTTCCGCATTGTTAACAAAGAATGGGAGTATTCTCATAAGAAAGGTTTTAAGTGTGCATTTGAACGTGGAATTCTGCATGTGTACTTCAATTTCAAACGCCACCGCTACCGAAGATAA

>Glyma.03g188600.2 sequence-type=CDS polypeptide=Glyma.03g188600.2.p locus=Glyma.03g188600 ID=Glyma.03g188600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGCAGAGAAAAAGAAACAGAGAGAAAGGATGGCAGAAATTGAAAAAGTAAAAAAGAGAAGAGAGGAAAGGGCACTTGAGAAAGCAAGGCACGAGGAAGAAATGGCACTGTTAGCCAGAGAGCGTGCTCGAGCTGAGTTTCAGGACTGGGAAAAAAAAGAAGAGGAGTTTCATTTTGATCAAAGCAAAGTTAGGTCAGAAATTAGATTGCGTGAAGGGCGTGCCAGACCCATCGATGTCCTAACCAAGCATCTCAATGGCTCTGATGATTTGGATATAGAAATAAATGAACCATACATGGTCTTCAAGGGTTTGACTGTGAACGAAATGAGTGAGCTACGTGACGACATCAAAATGCATCTAGACCTTGACAGGGCAACACCAACTCATGTAGAATATTGGGAGGCACTCCTTCTGGTTTGTGATTGGGAGCTAGCTGAAGCTCAAAGAAAGGATGCACTTGATCGAGCTAGGGTGCGTGGAGAAGAACCTCCTGCTGAGCTGCTTGCAGAAGAAAGGGGTCTGCATTCCAGTGTTGAGCCAGATGTGAAGAGGCTTTTGCAGGGGAAGACACTTGCAGAGTTGGAGGCTTTACGGGTTCACATTGAATCAGAAATGCGTACTGGTACAGCAAAGGTGGTTGAGTACTGGGAGGCCATTTTAAAACATCTCCACATTTATAAGGCCAAGGCTTGTTTAAAGGAAATTCATGCTAAATTGCTACGTAAGCATTTGCAATCTCTTGAGAGACCATTGGAGGATGAAGATAAATTGGAGAATGCTCATGTTATGATACCTGAGGAGGAAGATACTGAAGATGATATTAAAGTCCAATCTGCAGATGAATCATTCTCACCAGAGCCCATTAGAGAGGATCAAGAAGCTGATGATGAGGCTGGATCATTTTCACCACAACTGTTGCACGGTGATGAAAATGCGGAAGCTATTGACCCAGAAGAAGATAGAGCCATGCTGGAGCGGAATCGTAAGGCTGTATTAGAAGAGCAGCAAAGACGAGTTCAGGAAGCAATGGCATCAAAGCCAACTCCTTCTGAAGATCATTTTGAGATGAAGGCCTTAAAAGCTATGGGGGATATGGAAGATGGAGACTCTGTGTTTGGATCTGGTGCTGAAGTGAATCTGGATTCCCAGGTTTATTGGTGGCATGACAAATACAGGCCTAGGAAGCCGAAGTATTTCAACCGTGTTCACACTGGATATGAGTGGAACAAATATAATCAGACTCACTATGATCATGACAACCCACCTCCAAAGATAGTCCAAGGGTACAAATTTAATATTTTCTACCCTGATCTTGTAGACAAGACAAAAGCCCCAACCTACACCATTGAGAAGGATGGCAGCAATGGGGAGACTTGCATTATAAGATTCCACGCAGGGCCACCATATGAAGACATAGCTTTCCGCATTGTTAACAAAGAATGGGAGTATTCTCATAAGAAAGGTTTTAAGTGTGCATTTGAACGTGGAATTCTGCATGTGTACTTCAATTTCAAACGCCACCGCTACCGAAGATAA
Predicted protein sequences of Glyma.03g188600
>Glyma.03g188600.1.p sequence-type=predicted peptide transcript=Glyma.03g188600.1 locus=Glyma.03g188600 ID=Glyma.03g188600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKSSGRDRRRRRSHDSESDSPSDSDSDRRHRSNSRRSRRDSDGDRKKKSSKSESESPSDSDSDIRHRSSSRRSWRDSDGDRKKSSRSITEEEITKYMARKAQSKAMKVAKKLKTSTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVSQGVSIDAFSMKAEKKKQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVFKGLTVNEMSELRDDIKMHLDLDRATPTHVEYWEALLLVCDWELAEAQRKDALDRARVRGEEPPAELLAEERGLHSSVEPDVKRLLQGKTLAELEALRVHIESEMRTGTAKVVEYWEAILKHLHIYKAKACLKEIHAKLLRKHLQSLERPLEDEDKLENAHVMIPEEEDTEDDIKVQSADESFSPEPIREDQEADDEAGSFSPQLLHGDENAEAIDPEEDRAMLERNRKAVLEEQQRRVQEAMASKPTPSEDHFEMKALKAMGDMEDGDSVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCAFERGILHVYFNFKRHRYRR*

>Glyma.03g188600.2.p sequence-type=predicted peptide transcript=Glyma.03g188600.2 locus=Glyma.03g188600 ID=Glyma.03g188600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKAEKKKQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVFKGLTVNEMSELRDDIKMHLDLDRATPTHVEYWEALLLVCDWELAEAQRKDALDRARVRGEEPPAELLAEERGLHSSVEPDVKRLLQGKTLAELEALRVHIESEMRTGTAKVVEYWEAILKHLHIYKAKACLKEIHAKLLRKHLQSLERPLEDEDKLENAHVMIPEEEDTEDDIKVQSADESFSPEPIREDQEADDEAGSFSPQLLHGDENAEAIDPEEDRAMLERNRKAVLEEQQRRVQEAMASKPTPSEDHFEMKALKAMGDMEDGDSVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCAFERGILHVYFNFKRHRYRR*






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