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Report for Sequence Feature Glyma.03g184900

Feature Type:gene_model
Chromosome:Gm03
Start:39691917
stop:39697131
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g184900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G27730.1AT Protein of unknown function (DUF1624) JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016746GO-mf transferase activity, transferring acyl groups EnsemblGenomesN/AIEA
KOG4683 KOG Uncharacterized conserved protein JGI N/AIEA
PF07786PFAM Protein of unknown function (DUF1624) JGI N/AIEA
GN7V-55043SoyCyc9-rxn heparan-α-glucosaminide N-acetyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.03g184900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g184900
ParalogEvidenceComments
Glyma.19g185400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g184900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g34220 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g184900
>Glyma.03g184900.1 sequence-type=CDS polypeptide=Glyma.03g184900.1.p locus=Glyma.03g184900 ID=Glyma.03g184900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGAAGATCCTAAGAGAATGGAAGAAGGCCTCAATTCAGCATTGAATGGTGATGGCAATAAGGATGACTTGAAGAAGAGGGCAACCATTAAAACCAGTAATGGAGGTTCTATTTTTGAGCATGACAAAGACACAATGGCTAAGCCTGTGGCTGAGGGTGAGTCCGTACAGCAAATAGCTGAACAGGAGCAACCACCGGTTAAGCAGAAGACAAAGAGGGTTGCAACCCTTGATGCATTTAGGGGTCTCACCATAGTGTTGATGATTCTGGTAGACGATGCTGGTGAAGCTTATCCACGCATTGATCATTCCCCTTGGAATGGATGTACTTTGGCGGATTTCGTTATGCCTTTCTTTCTTTTCATTGTTGGGGTTGCCATAGCCCTTGCACTAAAGAGAATCTCAAAGATAAAGCATTCCGTAAAGAAGATAATCCTTAGGACATTGAAGCTTCTCTTCTGGGGTATAATTTTGCAAGGGGGTTACTCTCATGCCCCTGATGATCTCGAATATGGAGTTAACATGAAATTTATACGATGGTGTGGCATTCTCCAGAGAATCGCTCTTGTATACTGTGTTGTAGCTCTAATAGAAACATTTACCACCAAGCTTAGACCCACTACGTTGGCTTCTGGACACCTATCCATTTTTGCTGCTTATAAATGGCAATGGTTTGGGGGCTTCGTGGCATTTCTCATTTATATGATCACAACCTTCAGCCTCTACGTTCCAGATTGGAGTTTCGTGGATCACTTTAACGGCGATGAACCAAAGAGATACACGGTCATATGTGGGATGAGAGGACACCTAGGGCCAGCATGTAATGCTGTTGGGCACGTGGACCGACAAGTTTGGGGGGTCAACCATCTTTATTCTCAACCAGTTTGGAGACGCTTGAAGGCGTGTACATTCAGTTCTCCAGGCAGTGGTCCTTTTCGTGATGATGCCCCAAGTTGGTGTCTTGCTCCTTTTGAACCCGAAGGCTTGTTGAGTTCTATATCAGCAATCCTCAGTGGCACTATCGGCATCCATTATGGGCACGTCCTGATTCACTTCAAGGGTCATTCGGAGAGGCTAAAACAATGGGTCTCAATGGGGTTTGTGTTACTCATCATAGCCATCATCCTTCACTTCACAGATGCTTTACCAATTAACAAGCAACTCTACAGCTTCAGCTATGTTTGTTTCACAGCTGGGGCAGCTGGAATTGTCTTCTCTGGGTTCTACATACTGATCGATGTTTGGGGGCTCCGCACACCATTCCTGTTCTTGGAGTGGATAGGAATGAATGCTATGCTAGTGTTTGTGATGGCAGCGGAGGGCATCTTTGCAGCATTTGTAAATGGATGGTATTATGAAGATCCACGTAGCTCACTAGTACACTGGATCAAGAAGCATGTGTTTGTCAATGTTTGGCACTCAGAGAGGGTGGGAACCATCTTATATGTCATCTTTGCAGAAATCACTTTCTGGAGTGTGGTTGCTGGCGTCTTACACAAATTAGGAATATATTGGAAACTATAA
Predicted protein sequences of Glyma.03g184900
>Glyma.03g184900.1.p sequence-type=predicted peptide transcript=Glyma.03g184900.1 locus=Glyma.03g184900 ID=Glyma.03g184900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDEDPKRMEEGLNSALNGDGNKDDLKKRATIKTSNGGSIFEHDKDTMAKPVAEGESVQQIAEQEQPPVKQKTKRVATLDAFRGLTIVLMILVDDAGEAYPRIDHSPWNGCTLADFVMPFFLFIVGVAIALALKRISKIKHSVKKIILRTLKLLFWGIILQGGYSHAPDDLEYGVNMKFIRWCGILQRIALVYCVVALIETFTTKLRPTTLASGHLSIFAAYKWQWFGGFVAFLIYMITTFSLYVPDWSFVDHFNGDEPKRYTVICGMRGHLGPACNAVGHVDRQVWGVNHLYSQPVWRRLKACTFSSPGSGPFRDDAPSWCLAPFEPEGLLSSISAILSGTIGIHYGHVLIHFKGHSERLKQWVSMGFVLLIIAIILHFTDALPINKQLYSFSYVCFTAGAAGIVFSGFYILIDVWGLRTPFLFLEWIGMNAMLVFVMAAEGIFAAFVNGWYYEDPRSSLVHWIKKHVFVNVWHSERVGTILYVIFAEITFWSVVAGVLHKLGIYWKL*






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