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Report for Sequence Feature Glyma.03g184000

Feature Type:gene_model
Chromosome:Gm03
Start:39593712
stop:39596292
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g184000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36880.1AT methionine adenosyltransferase 3 JGI N/AIEA
GO:0006556GO-bp S-adenosylmethionine biosynthetic process EnsemblGenomesN/AIEA
GO:0006556GO-bp S-adenosylmethionine biosynthetic process JGI N/AIEA
GO:0006730GO-bp one-carbon metabolic process EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004478GO-mf methionine adenosyltransferase activity EnsemblGenomesN/AIEA
GO:0004478GO-mf methionine adenosyltransferase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG1506 KOG S-adenosylmethionine synthetase JGI N/AIEA
PTHR11964Panther S-ADENOSYLMETHIONINE SYNTHETASE JGI N/AIEA
PF00438PFAM S-adenosylmethionine synthetase, N-terminal domain JGI N/AIEA
PF02772PFAM S-adenosylmethionine synthetase, central domain JGI N/AIEA
PF02773PFAM S-adenosylmethionine synthetase, C-terminal domain JGI N/AIEA
ETHYL-PWYSoyCyc9 ethylene biosynthesis I (plants) Plant Metabolic Network ISS
METHIONINE-DEG1-PWYSoyCyc9 L-methionine degradation I (to L-homocysteine) Plant Metabolic Network ISS
PWY-5041SoyCyc9 S-adenosyl-L-methionine cycle II Plant Metabolic Network ISS
PWY-5912SoyCyc9 2'-deoxymugineic acid phytosiderophore biosynthesis Plant Metabolic Network ISS
PWY-7270SoyCyc9 L-methionine salvage cycle II (plants) Plant Metabolic Network ISS
PWY-7528SoyCyc9 L-methionine salvage cycle I (bacteria and plants) Plant Metabolic Network ISS
SAM-PWYSoyCyc9 S-adenosyl-L-methionine biosynthesis Plant Metabolic Network ISS
GN7V-62538SoyCyc9-rxn methionine adenosyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.03g184000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03g184000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g34120 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g184000
>Glyma.03g184000.1 sequence-type=CDS polypeptide=Glyma.03g184000.1.p locus=Glyma.03g184000 ID=Glyma.03g184000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAACTTTCCTCTTCACCTCAGAATCTGTAAACGAAGGCCATCCCGACAAGCTGTGTGACCAGGTTTCAGATGCCATCCTAGATGCATGCTTGGAGCAAGACCCAGAAAGCAAGGTTGCTTGCGAGACCTGTACAAAAACTAACATGGTTATGGTCTTTGGTGAGATTACAACCAAGGCCAGCGTGAACTACGAGAAAATAGTTCGAGACACTTGCAAAGGCATTGGGTTTGTGTCACCAGATGTTGGTCTTGATGCTGACAACTGCAAAGTTCTGGTCAACATTGAGCAACAGAGCCCTGATATTGCTCAAGGAGTTCACGGTCATATGACCAAGAAACCTGAGGAAATTGGTGCTGGTGACCAAGGCCACATGTTTGGTTATGCTACAGACGAAACACCTGAGTTAATGCCACTCACTCATGTGCTTGCTACTAAACTTGGTGCCAGGCTCACTGAGGTGAGAAAGAACAAAACATGCCCCTGGCTGAGGCCAGATGGTAAAACCCAAGTGACAGTTGAGTACAAGAACGATGGTGGAGCCATGATTCCTATTCGGGTTCACACAGTTCTCATCTCAACTCAGCATGATGAAACTGTCACAAATGAACAAATTTCTAAAGAATTGAAAGAGCATGTGATCAAACCTGTCATCCCAGCTAAATACCTTGATGATAAGACCATCTTCCACCTCAACCCCTCTGGTAGGTTTGTGATTGGTGGACCCCATGGAGATGCAGGACTCACTGGAAGGAAGATCATTATCGACACCTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCCTTCTCCGGCAAGGACCCAACCAAGGTTGATAGGAGTGGTGCATACATTGTTAGGCAAGCAGCCAAGAGCGTGGTAGCTTCAGGGCTTGCACGACGTTGCATTGTGCAGGTTTCTTATGCAATTGGAGTTCCAGAGCCACTTTCTGTGTTTGTAGACACATACCAAACGGGGAAGATTCCAGACAAGGACATATTGGCTCTAATTAAGGAGAAATTTGATTTCAGGCCAGGAATGATAGCAATCCATCTTGATCTCATGAGAGGAGGCAACTTCAGGTACCAGAAAACTGCTGCTTATGGGCATTTTGGACGTGAAGATCCTGATTTCACTTGGGAGACCGTGAAGATCCTCAAGCCTAACGCTTGA
Predicted protein sequences of Glyma.03g184000
>Glyma.03g184000.1.p sequence-type=predicted peptide transcript=Glyma.03g184000.1 locus=Glyma.03g184000 ID=Glyma.03g184000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKASVNYEKIVRDTCKGIGFVSPDVGLDADNCKVLVNIEQQSPDIAQGVHGHMTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYKNDGGAMIPIRVHTVLISTQHDETVTNEQISKELKEHVIKPVIPAKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYQTGKIPDKDILALIKEKFDFRPGMIAIHLDLMRGGNFRYQKTAAYGHFGREDPDFTWETVKILKPNA*






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