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Report for Sequence Feature Glyma.03g179800

Feature Type:gene_model
Chromosome:Gm03
Start:39203079
stop:39208383
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g179800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03160.1AT homolog of mamallian P58IPK JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG0550 KOG Molecular chaperone (DnaJ superfamily) JGI N/AIEA
PTHR24078Panther DNAJ HOMOLOG SUBFAMILY C MEMBER JGI N/AIEA
PTHR24078:SF56Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF00226PFAM DnaJ domain JGI N/AIEA
PF07719PFAM Tetratricopeptide repeat JGI N/AIEA

Expression Patterns of Glyma.03g179800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g179800
ParalogEvidenceComments
Glyma.19g180600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g179800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g33710 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g179800
>Glyma.03g179800.1 sequence-type=CDS polypeptide=Glyma.03g179800.1.p locus=Glyma.03g179800 ID=Glyma.03g179800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCAATGTTATAGGTTTTTCGTTGTTGACGATGGATTCGGTGGCGTACAGGGGATTGCTCTACACATTCTTCGTACTCAATTTTGTTTTGGTCTGCCAACTCATTCTCCTTCAACCTCTCGTCTCTGCTTCCGATGGAAAACCTGAAAATGCTGCTGAGTTGTTTGAGCGGGCATCACAGAACATAAAAGTTAAAGATTATACTGAGGCACTTGATGATCTAAATGCTGCAATAGAAGCAGACCCAACCCTTTCAAAAGCGTACCTTTTCAGAGCTTCAGTTCTTCGTCAGTTATGCAGATATGAGCAATCTGAGAGGAGCTACAAAAAGTTTCTGGAGTTAAAACCTGGAGATTCAGCTGCAGAAAAGGAGCTCTCTCAACTATTGCAGGCTCAAAGTGCTCTAGAAACAGCTCAGTCCCTCTATGATTCAGGCAACTTCTCAAAATCTTTGGAATATATTGATAAAGTTGTTCTTGTTTTTTCTTCAGCTTGCAATAAGGCTAAGCTTCTTAAAGTGAAGGTGTTAATTGCTGATAAAGAGTATGAGAGTGCTATTGCTGAGTCTGGGTTTCTTCTCAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTACGTGGCCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACTAGGCATTTTCAGAAAGGCCTCCGCCTAGATCCAGAGCATAGTGAACTGAAAAAGGCATATTTTGGATTGAAAAATCTACTAAAAAAGAGTAAAAGTGCTGAAGATAATGCAAACAAGGGTAAACTACGCGTGGCAGTGGAGGAATTCAAAGCTGCACTTGCTGTTGACCCTATCCATCTTGCACACAATGTAGATCTTCATTTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTGGACAGTTGTAGTGAAGCTCTTAAGATTGATGAGGAGCTTGTGGAAGCTCTTGTTCAGAGAGGAGAAGCTAAACTCTTAACAGAGGATTGGGAGGGAGCTGTGGAGGATCTGAGATCAGCTGCTCAAAAATCTCCTCAGGATATGAATATCCGTGAAGCAGTAATGAGGGCCGAGAAAGCTTTAAAGATAAGCAAACGCAAGGACTACTACAAAATTTTGGGAATTTCAAAAACAGCTTCGGCTGCTGATATAAAACGTGCCTACAAGAAACTCGCCTTACAATGGCATCCAGATAAGAATGTCGAAAAGAGGGAAGAAGCAGAGGCTCAATTCCGAGAAATCGCTGCTGCATATGAGGTTCTCAGCGACGAAGACAAGCGTGTAAGATATGACAGAGGGGAGGACCTTGAAGAGGCGGGAATGGGTGGTGGTGGCGGCGGTTTCAACCCTTTTGGTGGTGGGGGGTATACATATACTTTTGAGGGTGGCTTCCCTGGTGGTGGATTTGGAGGGGGCTTTCCTGGCGGTGGCGGCGGTGGATTTGAGTTCCATTTTTGA
Predicted protein sequences of Glyma.03g179800
>Glyma.03g179800.1.p sequence-type=predicted peptide transcript=Glyma.03g179800.1 locus=Glyma.03g179800 ID=Glyma.03g179800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFNVIGFSLLTMDSVAYRGLLYTFFVLNFVLVCQLILLQPLVSASDGKPENAAELFERASQNIKVKDYTEALDDLNAAIEADPTLSKAYLFRASVLRQLCRYEQSERSYKKFLELKPGDSAAEKELSQLLQAQSALETAQSLYDSGNFSKSLEYIDKVVLVFSSACNKAKLLKVKVLIADKEYESAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNANKGKLRVAVEEFKAALAVDPIHLAHNVDLHFGLCKVLVKLGRGKDALDSCSEALKIDEELVEALVQRGEAKLLTEDWEGAVEDLRSAAQKSPQDMNIREAVMRAEKALKISKRKDYYKILGISKTASAADIKRAYKKLALQWHPDKNVEKREEAEAQFREIAAAYEVLSDEDKRVRYDRGEDLEEAGMGGGGGGFNPFGGGGYTYTFEGGFPGGGFGGGFPGGGGGGFEFHF*






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