|
A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G09560.1 | AT | Lipin family protein | JGI | N/A | IEA |
GO:0016311 | GO-bp | dephosphorylation | EnsemblGenomes | N/A | IEA |
GO:0008195 | GO-mf | phosphatidate phosphatase activity | EnsemblGenomes | N/A | IEA |
PTHR12181 | Panther | LIPIN | JGI | N/A | IEA |
PTHR12181:SF4 | Panther | JGI | N/A | IEA | |
PF08235 | PFAM | LNS2 (Lipin/Ned1/Smp2) | JGI | N/A | IEA |
TRIGLSYN-PWY | SoyCyc9 | diacylglycerol and triacylglycerol biosynthesis | Plant Metabolic Network | ISS | |
GN7V-67566 | SoyCyc9-rxn | phosphatidate phosphatase | Plant Metabolic Network | ISS |
Glyma.03g174900 not represented in the dataset |
Glyma.03g174900 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.19g175600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma03g33211 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g174900.2 sequence-type=transcript locus=Glyma.03g174900 ID=Glyma.03g174900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 GATACATAGTGAAAAAAATAGAAGTATTATAAAATTTTTATATGAGTTGCGGGGACCCGCAATCGCCCTCAATTTTTTTGAGCTCTCATATTTCTCAATTTATCTGATGTTTTGGGGCAGTTTATGCCTTTAGTTGGAAAAGATTGGTCACAGTCTGGAGTGGCAAGGCTTTTCTCAGCTATTAAAGAAAATGGATACCAGCTACTGTTTTTGAGTGCCCGTGCTATTGTCCAGGCTTATCTAACCAGGAACTTTTTGCTTAACCTGAAACAGGATGACAAGACCTTACCGAATGGTCCTGTAGTTATTTCACCTGATGGATTATTTCCCTCTCTTTACCGAGAAGTAATAAGAAGGGCACCTCATGAGTTCAAGATTCCTTGTCTAGAGGATATCAAAAGACTTTTCCCTTCTGATTATAATCCGTTCTATGCGGGGTTTTGCAATAGAGACACGGATGAACTTAGTTACAGGAAGATAGGAATCCCGAAGGCCAAGATATTTATTATTAATCCTAAGGGTGAGGTAGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTGCACACACTCGTCAAGGATATGTTCCCTCCTACTTCTTTGGTTGAACAGGTGGACTTCAACTCATGGAATTATTGGAGAATGCCTTTTTCAGACGTTGATTAGTTCAATGCTTAGTTCCTTTTTTTGACAAGGATCCGTTGGTATGGGACCAACCAATATGTGTTAATCGATATACTATATGCCCTTTCTACTTGGCACAAAACTGTGACATGATTGGAAAGTGTCCTACTACACGGGAATTCGATGATGGCATGCGAGTGTTCTCTCGTAGAACGTTATTCATTCAATGTGCTGATCACACGCCTTTGCTTTCCTTCTTTTATATTAATGATTACCCATTAATGAACAACATTGTATAACATTTGGGTTACATGTATTATACTAATTTTTAACTAACCAAATAGTGGAAGTTTGTCCATCCCTACATTTGTACAATATACTACATTGTCAAAAAATAGAAGTTAA >Glyma.03g174900.3 sequence-type=transcript locus=Glyma.03g174900 ID=Glyma.03g174900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 AAAAAAATGATCTACATGAATTCATTTGCTATTATTATGGGTAGATGAACATGTTTGGTATATTGATGAGTTTTACGTAGGCTTGGGGCCGGCTATGAAACCATAGGCAAAGTTTATGGCTAGACGGACATAACTTAATGAAAATTAAACTAAAGCAAAAAATTGCAGCAAGAATAGAAGACAGTTGTATTATTATGGTATTGGTTTCAAAATCACTAGCAACACCTTACTGCTCTACTGTTCCTTCCTTTCAGATCTGATGTTTTGGGGCAGTTTATGCCTTTAGTTGGAAAAGATTGGTCACAGTCTGGAGTGGCAAGGCTTTTCTCAGCTATTAAAGATGACAAGACCTTACCGAATGGTCCTGTAGTTATTTCACCTGATGGATTATTTCCCTCTCTTTACCGAGAAGTAATAAGAAGGGCACCTCATGAGTTCAAGATTCCTTGTCTAGAGGATATCAAAAGACTTTTCCCTTCTGATTATAATCCGTTCTATGCGGGGTTTTGCAATAGAGACACGGATGAACTTAGTTACAGGAAGATAGGAATCCCGAAGGCCAAGATATTTATTATTAATCCTAAGGGTGAGGTAGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTGCACACACTCGTCAAGGATATGTTCCCTCCTACTTCTTTGGTTGAACAGGTGGACTTCAACTCATGGAATTATTGGAGAATGCCTTTTTCAGACGTTGATTAGTTCAATGCTTAGTTCCTTTTTTTGACAAGGATCCGTTGGTATGGGACCAACCAATATGTGTTAATCGATATACTATATGCCCTTTCTACTTGGCACAAAACTGTGACATGATTGGAAAGTGTCCTACTACACGGGAATTCGATGATGGCATGCGAGTGTTCTCTCGTAGAACGTTATTCATTCAATGTGCTGATCACACGCCTTTGCTTTCCTTCTTTTATATTAATGATTACCCATTAATGAACAACATTGTATAACATTTGGGTTACATGTATTATACTAATTTTTAACTAACCAAATAGTGGAAGTTTGTCCATCCCTACATTTGTACAATATACTACATTGTCAAAAAATAGAAGTTAA
>Glyma.03g174900.1 sequence-type=CDS polypeptide=Glyma.03g174900.1.p locus=Glyma.03g174900 ID=Glyma.03g174900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCTTTAGTTGGAAAAGATTGGTCACAGTCTGGAGTGGCAAGGCTTTTCTCAGCTATTAAAGAAAATGGATACCAGCTACTGTTTTTGAGTGCCCGTGCTATTGTCCAGGCTTATCTAACCAGGAACTTTTTGCTTAACCTGAAACAGGATGACAAGACCTTACCGAATGGTCCTGTAGTTATTTCACCTGATGGATTATTTCCCTCTCTTTACCGAGAAGTAATAAGAAGGGCACCTCATGAGTTCAAGATTCCTTGTCTAGAGGATATCAAAAGACTTTTCCCTTCTGATTATAATCCGTTCTATGCGGGGTTTTGCAATAGAGACACGGATGAACTTAGTTACAGGAAGATAGGAATCCCGAAGGCCAAGATATTTATTATTAATCCTAAGGGTGAGGTAGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTGCACACACTCGTCAAGGATATGTTCCCTCCTACTTCTTTGGTTGAACAGGTGGACTTCAACTCATGGAATTATTGGAGAATGCCTTTTTCAGACGTTGATTAG >Glyma.03g174900.2 sequence-type=CDS polypeptide=Glyma.03g174900.2.p locus=Glyma.03g174900 ID=Glyma.03g174900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCTTTAGTTGGAAAAGATTGGTCACAGTCTGGAGTGGCAAGGCTTTTCTCAGCTATTAAAGAAAATGGATACCAGCTACTGTTTTTGAGTGCCCGTGCTATTGTCCAGGCTTATCTAACCAGGAACTTTTTGCTTAACCTGAAACAGGATGACAAGACCTTACCGAATGGTCCTGTAGTTATTTCACCTGATGGATTATTTCCCTCTCTTTACCGAGAAGTAATAAGAAGGGCACCTCATGAGTTCAAGATTCCTTGTCTAGAGGATATCAAAAGACTTTTCCCTTCTGATTATAATCCGTTCTATGCGGGGTTTTGCAATAGAGACACGGATGAACTTAGTTACAGGAAGATAGGAATCCCGAAGGCCAAGATATTTATTATTAATCCTAAGGGTGAGGTAGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTGCACACACTCGTCAAGGATATGTTCCCTCCTACTTCTTTGGTTGAACAGGTGGACTTCAACTCATGGAATTATTGGAGAATGCCTTTTTCAGACGTTGATTAG >Glyma.03g174900.3 sequence-type=CDS polypeptide=Glyma.03g174900.3.p locus=Glyma.03g174900 ID=Glyma.03g174900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCTTTAGTTGGAAAAGATTGGTCACAGTCTGGAGTGGCAAGGCTTTTCTCAGCTATTAAAGATGACAAGACCTTACCGAATGGTCCTGTAGTTATTTCACCTGATGGATTATTTCCCTCTCTTTACCGAGAAGTAATAAGAAGGGCACCTCATGAGTTCAAGATTCCTTGTCTAGAGGATATCAAAAGACTTTTCCCTTCTGATTATAATCCGTTCTATGCGGGGTTTTGCAATAGAGACACGGATGAACTTAGTTACAGGAAGATAGGAATCCCGAAGGCCAAGATATTTATTATTAATCCTAAGGGTGAGGTAGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTGCACACACTCGTCAAGGATATGTTCCCTCCTACTTCTTTGGTTGAACAGGTGGACTTCAACTCATGGAATTATTGGAGAATGCCTTTTTCAGACGTTGATTAG
>Glyma.03g174900.1.p sequence-type=predicted peptide transcript=Glyma.03g174900.1 locus=Glyma.03g174900 ID=Glyma.03g174900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPLVGKDWSQSGVARLFSAIKENGYQLLFLSARAIVQAYLTRNFLLNLKQDDKTLPNGPVVISPDGLFPSLYREVIRRAPHEFKIPCLEDIKRLFPSDYNPFYAGFCNRDTDELSYRKIGIPKAKIFIINPKGEVAISHRIDAKSYTSLHTLVKDMFPPTSLVEQVDFNSWNYWRMPFSDVD* >Glyma.03g174900.2.p sequence-type=predicted peptide transcript=Glyma.03g174900.2 locus=Glyma.03g174900 ID=Glyma.03g174900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPLVGKDWSQSGVARLFSAIKENGYQLLFLSARAIVQAYLTRNFLLNLKQDDKTLPNGPVVISPDGLFPSLYREVIRRAPHEFKIPCLEDIKRLFPSDYNPFYAGFCNRDTDELSYRKIGIPKAKIFIINPKGEVAISHRIDAKSYTSLHTLVKDMFPPTSLVEQVDFNSWNYWRMPFSDVD* >Glyma.03g174900.3.p sequence-type=predicted peptide transcript=Glyma.03g174900.3 locus=Glyma.03g174900 ID=Glyma.03g174900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPLVGKDWSQSGVARLFSAIKDDKTLPNGPVVISPDGLFPSLYREVIRRAPHEFKIPCLEDIKRLFPSDYNPFYAGFCNRDTDELSYRKIGIPKAKIFIINPKGEVAISHRIDAKSYTSLHTLVKDMFPPTSLVEQVDFNSWNYWRMPFSDVD*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||