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Report for Sequence Feature Glyma.03g174900

Feature Type:gene_model
Chromosome:Gm03
Start:38853393
stop:38857607
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g174900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09560.1AT Lipin family protein JGI N/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0008195GO-mf phosphatidate phosphatase activity EnsemblGenomesN/AIEA
PTHR12181Panther LIPIN JGI N/AIEA
PTHR12181:SF4Panther JGI N/AIEA
PF08235PFAM LNS2 (Lipin/Ned1/Smp2) JGI N/AIEA
TRIGLSYN-PWYSoyCyc9 diacylglycerol and triacylglycerol biosynthesis Plant Metabolic Network ISS
GN7V-67566SoyCyc9-rxn phosphatidate phosphatase Plant Metabolic Network ISS

Expression Patterns of Glyma.03g174900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g174900 not represented in the dataset
Glyma.03g174900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g174900
ParalogEvidenceComments
Glyma.19g175600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g174900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g33211 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g174900
>Glyma.03g174900.2 sequence-type=transcript locus=Glyma.03g174900 ID=Glyma.03g174900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GATACATAGTGAAAAAAATAGAAGTATTATAAAATTTTTATATGAGTTGCGGGGACCCGCAATCGCCCTCAATTTTTTTGAGCTCTCATATTTCTCAATTTATCTGATGTTTTGGGGCAGTTTATGCCTTTAGTTGGAAAAGATTGGTCACAGTCTGGAGTGGCAAGGCTTTTCTCAGCTATTAAAGAAAATGGATACCAGCTACTGTTTTTGAGTGCCCGTGCTATTGTCCAGGCTTATCTAACCAGGAACTTTTTGCTTAACCTGAAACAGGATGACAAGACCTTACCGAATGGTCCTGTAGTTATTTCACCTGATGGATTATTTCCCTCTCTTTACCGAGAAGTAATAAGAAGGGCACCTCATGAGTTCAAGATTCCTTGTCTAGAGGATATCAAAAGACTTTTCCCTTCTGATTATAATCCGTTCTATGCGGGGTTTTGCAATAGAGACACGGATGAACTTAGTTACAGGAAGATAGGAATCCCGAAGGCCAAGATATTTATTATTAATCCTAAGGGTGAGGTAGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTGCACACACTCGTCAAGGATATGTTCCCTCCTACTTCTTTGGTTGAACAGGTGGACTTCAACTCATGGAATTATTGGAGAATGCCTTTTTCAGACGTTGATTAGTTCAATGCTTAGTTCCTTTTTTTGACAAGGATCCGTTGGTATGGGACCAACCAATATGTGTTAATCGATATACTATATGCCCTTTCTACTTGGCACAAAACTGTGACATGATTGGAAAGTGTCCTACTACACGGGAATTCGATGATGGCATGCGAGTGTTCTCTCGTAGAACGTTATTCATTCAATGTGCTGATCACACGCCTTTGCTTTCCTTCTTTTATATTAATGATTACCCATTAATGAACAACATTGTATAACATTTGGGTTACATGTATTATACTAATTTTTAACTAACCAAATAGTGGAAGTTTGTCCATCCCTACATTTGTACAATATACTACATTGTCAAAAAATAGAAGTTAA

>Glyma.03g174900.3 sequence-type=transcript locus=Glyma.03g174900 ID=Glyma.03g174900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAAATGATCTACATGAATTCATTTGCTATTATTATGGGTAGATGAACATGTTTGGTATATTGATGAGTTTTACGTAGGCTTGGGGCCGGCTATGAAACCATAGGCAAAGTTTATGGCTAGACGGACATAACTTAATGAAAATTAAACTAAAGCAAAAAATTGCAGCAAGAATAGAAGACAGTTGTATTATTATGGTATTGGTTTCAAAATCACTAGCAACACCTTACTGCTCTACTGTTCCTTCCTTTCAGATCTGATGTTTTGGGGCAGTTTATGCCTTTAGTTGGAAAAGATTGGTCACAGTCTGGAGTGGCAAGGCTTTTCTCAGCTATTAAAGATGACAAGACCTTACCGAATGGTCCTGTAGTTATTTCACCTGATGGATTATTTCCCTCTCTTTACCGAGAAGTAATAAGAAGGGCACCTCATGAGTTCAAGATTCCTTGTCTAGAGGATATCAAAAGACTTTTCCCTTCTGATTATAATCCGTTCTATGCGGGGTTTTGCAATAGAGACACGGATGAACTTAGTTACAGGAAGATAGGAATCCCGAAGGCCAAGATATTTATTATTAATCCTAAGGGTGAGGTAGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTGCACACACTCGTCAAGGATATGTTCCCTCCTACTTCTTTGGTTGAACAGGTGGACTTCAACTCATGGAATTATTGGAGAATGCCTTTTTCAGACGTTGATTAGTTCAATGCTTAGTTCCTTTTTTTGACAAGGATCCGTTGGTATGGGACCAACCAATATGTGTTAATCGATATACTATATGCCCTTTCTACTTGGCACAAAACTGTGACATGATTGGAAAGTGTCCTACTACACGGGAATTCGATGATGGCATGCGAGTGTTCTCTCGTAGAACGTTATTCATTCAATGTGCTGATCACACGCCTTTGCTTTCCTTCTTTTATATTAATGATTACCCATTAATGAACAACATTGTATAACATTTGGGTTACATGTATTATACTAATTTTTAACTAACCAAATAGTGGAAGTTTGTCCATCCCTACATTTGTACAATATACTACATTGTCAAAAAATAGAAGTTAA
Coding sequences of Glyma.03g174900
>Glyma.03g174900.1 sequence-type=CDS polypeptide=Glyma.03g174900.1.p locus=Glyma.03g174900 ID=Glyma.03g174900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTTTAGTTGGAAAAGATTGGTCACAGTCTGGAGTGGCAAGGCTTTTCTCAGCTATTAAAGAAAATGGATACCAGCTACTGTTTTTGAGTGCCCGTGCTATTGTCCAGGCTTATCTAACCAGGAACTTTTTGCTTAACCTGAAACAGGATGACAAGACCTTACCGAATGGTCCTGTAGTTATTTCACCTGATGGATTATTTCCCTCTCTTTACCGAGAAGTAATAAGAAGGGCACCTCATGAGTTCAAGATTCCTTGTCTAGAGGATATCAAAAGACTTTTCCCTTCTGATTATAATCCGTTCTATGCGGGGTTTTGCAATAGAGACACGGATGAACTTAGTTACAGGAAGATAGGAATCCCGAAGGCCAAGATATTTATTATTAATCCTAAGGGTGAGGTAGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTGCACACACTCGTCAAGGATATGTTCCCTCCTACTTCTTTGGTTGAACAGGTGGACTTCAACTCATGGAATTATTGGAGAATGCCTTTTTCAGACGTTGATTAG

>Glyma.03g174900.2 sequence-type=CDS polypeptide=Glyma.03g174900.2.p locus=Glyma.03g174900 ID=Glyma.03g174900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTTTAGTTGGAAAAGATTGGTCACAGTCTGGAGTGGCAAGGCTTTTCTCAGCTATTAAAGAAAATGGATACCAGCTACTGTTTTTGAGTGCCCGTGCTATTGTCCAGGCTTATCTAACCAGGAACTTTTTGCTTAACCTGAAACAGGATGACAAGACCTTACCGAATGGTCCTGTAGTTATTTCACCTGATGGATTATTTCCCTCTCTTTACCGAGAAGTAATAAGAAGGGCACCTCATGAGTTCAAGATTCCTTGTCTAGAGGATATCAAAAGACTTTTCCCTTCTGATTATAATCCGTTCTATGCGGGGTTTTGCAATAGAGACACGGATGAACTTAGTTACAGGAAGATAGGAATCCCGAAGGCCAAGATATTTATTATTAATCCTAAGGGTGAGGTAGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTGCACACACTCGTCAAGGATATGTTCCCTCCTACTTCTTTGGTTGAACAGGTGGACTTCAACTCATGGAATTATTGGAGAATGCCTTTTTCAGACGTTGATTAG

>Glyma.03g174900.3 sequence-type=CDS polypeptide=Glyma.03g174900.3.p locus=Glyma.03g174900 ID=Glyma.03g174900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTTTAGTTGGAAAAGATTGGTCACAGTCTGGAGTGGCAAGGCTTTTCTCAGCTATTAAAGATGACAAGACCTTACCGAATGGTCCTGTAGTTATTTCACCTGATGGATTATTTCCCTCTCTTTACCGAGAAGTAATAAGAAGGGCACCTCATGAGTTCAAGATTCCTTGTCTAGAGGATATCAAAAGACTTTTCCCTTCTGATTATAATCCGTTCTATGCGGGGTTTTGCAATAGAGACACGGATGAACTTAGTTACAGGAAGATAGGAATCCCGAAGGCCAAGATATTTATTATTAATCCTAAGGGTGAGGTAGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTGCACACACTCGTCAAGGATATGTTCCCTCCTACTTCTTTGGTTGAACAGGTGGACTTCAACTCATGGAATTATTGGAGAATGCCTTTTTCAGACGTTGATTAG
Predicted protein sequences of Glyma.03g174900
>Glyma.03g174900.1.p sequence-type=predicted peptide transcript=Glyma.03g174900.1 locus=Glyma.03g174900 ID=Glyma.03g174900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPLVGKDWSQSGVARLFSAIKENGYQLLFLSARAIVQAYLTRNFLLNLKQDDKTLPNGPVVISPDGLFPSLYREVIRRAPHEFKIPCLEDIKRLFPSDYNPFYAGFCNRDTDELSYRKIGIPKAKIFIINPKGEVAISHRIDAKSYTSLHTLVKDMFPPTSLVEQVDFNSWNYWRMPFSDVD*

>Glyma.03g174900.2.p sequence-type=predicted peptide transcript=Glyma.03g174900.2 locus=Glyma.03g174900 ID=Glyma.03g174900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPLVGKDWSQSGVARLFSAIKENGYQLLFLSARAIVQAYLTRNFLLNLKQDDKTLPNGPVVISPDGLFPSLYREVIRRAPHEFKIPCLEDIKRLFPSDYNPFYAGFCNRDTDELSYRKIGIPKAKIFIINPKGEVAISHRIDAKSYTSLHTLVKDMFPPTSLVEQVDFNSWNYWRMPFSDVD*

>Glyma.03g174900.3.p sequence-type=predicted peptide transcript=Glyma.03g174900.3 locus=Glyma.03g174900 ID=Glyma.03g174900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPLVGKDWSQSGVARLFSAIKDDKTLPNGPVVISPDGLFPSLYREVIRRAPHEFKIPCLEDIKRLFPSDYNPFYAGFCNRDTDELSYRKIGIPKAKIFIINPKGEVAISHRIDAKSYTSLHTLVKDMFPPTSLVEQVDFNSWNYWRMPFSDVD*






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