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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G61040.1 | AT | plus-3 domain-containing protein | JGI | N/A | IEA |
| GO:0006352 | GO-bp | DNA-templated transcription, initiation | JGI | N/A | IEA |
| GO:0006357 | GO-bp | regulation of transcription by RNA polymerase II | EnsemblGenomes | N/A | IEA |
| GO:0006368 | GO-bp | transcription elongation from RNA polymerase II promoter | EnsemblGenomes | N/A | IEA |
| GO:0016570 | GO-bp | histone modification | EnsemblGenomes | N/A | IEA |
| GO:0016570 | GO-bp | histone modification | JGI | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | JGI | N/A | IEA |
| GO:0016593 | GO-cc | Cdc73/Paf1 complex | EnsemblGenomes | N/A | IEA |
| GO:0001076 | GO-mf | transcription factor activity, RNA polymerase II transcription factor binding | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | JGI | N/A | IEA |
| GO:1990269 | GO-mf | RNA polymerase II C-terminal domain phosphoserine binding | EnsemblGenomes | N/A | IEA |
| KOG2402 | KOG | Paf1/RNA polymerase II complex, RTF1 component (involved in regulation of TATA box-binding protein) | JGI | N/A | IEA |
| PTHR13115 | Panther | UNCHARACTERIZED | JGI | N/A | IEA |
| PTHR13115:SF8 | Panther | RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG | JGI | N/A | IEA |
| PF03126 | PFAM | Plus-3 domain | JGI | N/A | IEA |
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Glyma.03g168800 not represented in the dataset |
Glyma.03g168800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.19g170200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma03g32600 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g168800.1 sequence-type=CDS polypeptide=Glyma.03g168800.1.p locus=Glyma.03g168800 ID=Glyma.03g168800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGATTTAGAAAATTTGCTTTTGGAGGCAGCGGGGAGAACACGACATTCTTGTCAACCTTCAAGAAGAGGACATGGTGGTGGTGGTGGGAGTGACTCTAGGGAGGATGATTCGGAGGATGAACATGATTATTCAGGTCGGAAGCCCTCTAGCTTGCAAGTTCCCCTAAAGAAGAGGTTTGATCCAATCGAACGAGATGATGGTGAGAGAAGTAAGGATGAAGGGGATGATGATGTTGGTGGCCGATGTTGTCACGAGGGCGATAGCAGTGATGAATCTGATTTTGGTGATGATCTTTATAAGAATGAAGATGACAGGCTTAATCTGTCGGAGATGACTGAACTTCAAAGAGAGATGATATTGTCAGAAAGGGCTACCAAGAAGCATGATAAATATTTCTTGGGGAAGATAGCATCAAAGCGTGAGAAGGGAAAGAAAACTGTAGCCGGGAAACAGACTTCACCTCTCCCGCCATCTCGTGTGCGTTCATCAGCCAGATCTGCCGACAGGTCAACTGCCAAGGATGGTGCATTAAATGAATTGCGTGCAAAACGGTTAAAGCAGCAAGATTCAGAAGCAAACCGCAGGCCAAGTGAGGCATCTAGAAGTTCAGGGCCTGGGCATTTTTCACCAAAGCACAAACCTTTCCCAAATCTCAGTAGCTCAAGTGATAGTGAAACTGAAAGTAAGTCCCTGAGTGATAATGAAGGGTTGAGTGATGACGACAGAATCATCGACAGTGATGATGACAGGATAATGTTAGGATCTGAAGGGCTTTCATTTGAGGATATAAAAGAAATCACCATTCGGAGATCAAAACTTGCAAAATGGTTTATGGAGCCTTTTTTTGAGGAGTTAATTGCTGATTGTTTTGTAAGAGTTGGTATTGGTCGCCCGAAGTCAGGGCCTATCTACAGGCTCTGCATGGTAAAAAATGTTGATGCCACAGATCGTGCTCGGCAGTATAAATTAGAAAATAAAACCACACACAAGTACTTAAATCTTGTCTGGGGAAATGAAACTTCTGCTGCAAGGTGGCAAATGGCTATGATTAGCAACTCTCCTCCAAAGGAGGAAGAGTTCATCCAGTGGGTTAAGGAAGTAGAGAGAAGAGGTGGCCGGATGCCAACAAAGCAAGAAGTGGCAGAAAAAAAAGAAGCTATACTAAAGACCAACTTGTTTGTTTACTCAGCAGCTACTGTGAAGCAGATGTTACAAGAGAAAAAATCTGCCAAAACAAGACCACTAAATATTGCAGCTGAGAAGGATAGGTTAAGGACAGAATTGGAAATAGCACATAGTAAGAATAGTAAAGCTGAAGTGAAGAGGATCATGACAAGATTGGAAGAATTGGAGGAATCACGGAAAGCTAAGAGGATGGATGCCAGGGCTTTGAAGCTTGCTGAGATGAATAGAAAGAACAGGTTTGAGAACTTCAAAAATGCTTCTGAATTGAAGCCAGTAAATAAAGAATTGAAAGCAGGGGAGGCAGGTTATGATCCTTTTTCAAGGAGATGGACTAGATCAAGGAATTACTACTCTGGAAAACCAGCTGAAGAGGGTGCAGCTGAAAATAATAGTGCAGGTGGTGATACAGGCAGCTACCACACAGGAGCAGCTGAGACCGTGATGGCTGGTACGGCAGCTACTACTGCAGCTTTGAAAGCTGCTGCCGGTGCTGGGAAGTTAGTAGACACAAGCGCTCCGGTGGATCAAGCCACAGAGTCAAATGTGCTGCACAATTTTGAGCTGCCAATATCATTGGCTACACTCCAAAACTTTGGTGGAGCCAAAGGAGTTCAGGCAGGATATATGGCAAAGAAACAAAGAATAGAAGCAACAGCTGGATTTAAAGTCCTGGAAAATGATCGTCAGAAGCATGCGCTGACATTAACAGTTAGTGATTACAAGAGAAGAAGAGGGCTAATTTGA
>Glyma.03g168800.1.p sequence-type=predicted peptide transcript=Glyma.03g168800.1 locus=Glyma.03g168800 ID=Glyma.03g168800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MADLENLLLEAAGRTRHSCQPSRRGHGGGGGSDSREDDSEDEHDYSGRKPSSLQVPLKKRFDPIERDDGERSKDEGDDDVGGRCCHEGDSSDESDFGDDLYKNEDDRLNLSEMTELQREMILSERATKKHDKYFLGKIASKREKGKKTVAGKQTSPLPPSRVRSSARSADRSTAKDGALNELRAKRLKQQDSEANRRPSEASRSSGPGHFSPKHKPFPNLSSSSDSETESKSLSDNEGLSDDDRIIDSDDDRIMLGSEGLSFEDIKEITIRRSKLAKWFMEPFFEELIADCFVRVGIGRPKSGPIYRLCMVKNVDATDRARQYKLENKTTHKYLNLVWGNETSAARWQMAMISNSPPKEEEFIQWVKEVERRGGRMPTKQEVAEKKEAILKTNLFVYSAATVKQMLQEKKSAKTRPLNIAAEKDRLRTELEIAHSKNSKAEVKRIMTRLEELEESRKAKRMDARALKLAEMNRKNRFENFKNASELKPVNKELKAGEAGYDPFSRRWTRSRNYYSGKPAEEGAAENNSAGGDTGSYHTGAAETVMAGTAATTAALKAAAGAGKLVDTSAPVDQATESNVLHNFELPISLATLQNFGGAKGVQAGYMAKKQRIEATAGFKVLENDRQKHALTLTVSDYKRRRGLI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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