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Report for Sequence Feature Glyma.03g168300

Feature Type:gene_model
Chromosome:Gm03
Start:38271420
stop:38274877
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g168300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01435.1AT Expressed protein JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0006357GO-bp regulation of transcription from RNA polymerase II promoter JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0016592GO-cc mediator complex EnsemblGenomesN/AIEA
GO:0016592GO-cc mediator complex JGI N/AIEA
GO:0003712GO-mf transcription cofactor activity EnsemblGenomesN/AIEA
PF10280PFAM Mediator complex protein JGI N/AIEA

Proteins Associated with Glyma.03g168300
LocusGene SymbolProtein Name
MED11-1 Mediator Complex 11 gene 1

Expression Patterns of Glyma.03g168300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g168300
ParalogEvidenceComments
Glyma.19g169600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g168300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g32550 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g168300
>Glyma.03g168300.1 sequence-type=CDS polypeptide=Glyma.03g168300.1.p locus=Glyma.03g168300 ID=Glyma.03g168300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGAGAATTGTGAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGGTTGCATTGCGTGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGATTATGGTTCAAGAATAGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCCCAGTTGGATGCTATAAAACAAACTGTAGATGAGTATCATGTAGCAGTTTGA
Predicted protein sequences of Glyma.03g168300
>Glyma.03g168300.1.p sequence-type=predicted peptide transcript=Glyma.03g168300.1 locus=Glyma.03g168300 ID=Glyma.03g168300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSQGQTTSLQRLQNVEKRIVKVLELAGGVMDELASPVGPRKDVVQNHCLEFMQLIKDIQVALRDEIKSACEYRPFEKCDYGSRIANEICHKKVEFIMSQLDAIKQTVDEYHVAV*






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