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Report for Sequence Feature Glyma.03g167900

Feature Type:gene_model
Chromosome:Gm03
Start:38220046
stop:38226906
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g167900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G20340.1AT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein JGI N/AIEA
GO:0006520GO-bp cellular amino acid metabolic process EnsemblGenomesN/AIEA
GO:0019752GO-bp carboxylic acid metabolic process EnsemblGenomesN/AIEA
GO:0019752GO-bp carboxylic acid metabolic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
GO:0016831GO-mf carboxy-lyase activity EnsemblGenomesN/AIEA
GO:0016831GO-mf carboxy-lyase activity JGI N/AIEA
GO:0030170GO-mf pyridoxal phosphate binding EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding JGI N/AIEA
KOG0628 KOG Aromatic-L-amino-acid/L-histidine decarboxylase JGI N/AIEA
PTHR11999Panther GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE JGI N/AIEA
PTHR11999:SF11Panther JGI N/AIEA
PF00282PFAM Pyridoxal-dependent decarboxylase conserved domain JGI N/AIEA
PWY-6802SoyCyc9 salidroside biosynthesis Plant Metabolic Network ISS
GN7V-47461SoyCyc9-rxn tyrosine decarboxylase Plant Metabolic Network ISS

Expression Patterns of Glyma.03g167900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03g167900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g32510 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g167900
>Glyma.03g167900.2 sequence-type=transcript locus=Glyma.03g167900 ID=Glyma.03g167900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTGCGACTGGGAAACGACGTTGGGCGTTGTGAATCTTGTGATCATCGAAAGTCACTGTAGTCTATTTTGTCTACAAAATATCTGGACTGACGGAGTAGAAACAACTGCACCACAAGGGGATTGGGGATAATTTCAATACGTCTAGTGTTTGCAAAAATGGAAGAAGAAAGTGCGTTGAGGCCGATGGACGCTGAGCAACTGAGAGAGCAGGCTCATAAGATGGTCGACTTCATTGCCGATTACTACAAAACCATCGAAGACTTCCCCGTTCTAAGCCAAGTTCAGCCAGGTTATCTTGGGAAGCTTTTACCAGATTCTGCACCTGATTCTCCTGAGTCATTGCAAAATGTTTTGGATGATGTGCAGGAAAAAATACTGCCAGGGGTGACGCACTGGCAAAGCCCAAATTATTTTGCGTATTTTCCTTCCAACAGTAGCATTGCTGGGTTTCTAGGAGAGATGCTCAGTGCGGGTCTTAACATCGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCAACTGAACTTGAGACGATTGTTCTGGATTGGCTTGCAAAGGCTTTCCAGCTGCCTGATTATTTCTATTCTAGTGGGAAAGGTGGTGGAGTTATACAGGGAACTGCAAGTGAAGCTGTACTAGTTGTCTTATTAGCTGCCCGTGACAAGATCTTAAGGAGGGTTGGAAGGAATGCCCTTCCTAAGCTTGTGATGTATGCATCTGATCAAACACACTCTGCTTTACTAAAAGCTTGCCAGATAGCAGGAATTAATCCAGAGCTATGCAGGTTGCTTAAAACTGATTCTTCCACAAATTATGCACTTTCTCCTGATGTGCTTTCTGAAGCAATTTCAAATGACATTGCTGGCGGTCTTGTACCCTTTTTCTTATGTGCTACTGTTGGTACCACTTCATCAACAGCTGTTGATCCTCTGCCTGCATTGGGAAAAATTGCCAAGACCAACAAACTTTGGTTTCATGTGGATGCTGCTTATGCTGGAAGTGCTTGTGTATGTCCAGAGTACCGCCACTGCATTGATGGTGTTGAAGAAGCCGACTCATTTAACATGAATGCACATAAATGGTTCCTGACTAACTTTGACTGTTCATTACTTTGGGTTAAGGACAGAAGTTCTCTGATTCAATCATTGTCTACAAATCCTGAATTTCTGAAAAACAAGGCCTCTCAAGGAAACATGGTCATAGATTACAAAGATTGGCAAATTCCTCTTGGACGTCGCTTTAGATCATTAAAACTGTGGATGGTGTTGCGACTCTATGGATTGGATGGTCTGCGAAGTCACATAAGAAACCACATTGAGTTGGCTGCTAACTTTGAGGAGCTTGTACGTCAGGACACAAGATTCAAGGTTGTTGCACCTCGCACGTTCTCTTTAGTTTGTTTTCGGCTGCTGCCCCATCCCAATTCTGCAGATCATGGGAATAAGCTAAATAGTGATCTACTCGACTCAGTAAATTCAACTGGAAATGCTTTCATAACACACACGGTTCTATCAGGGGAGTACATTCTACGTTTTGCAGTAGGAGCACCATTGACAGAAAGGAGGCATGTCAATATGGCATGGCAAATTTTGCAAGATAAAGCCACTGCTCTACTTGAGAGTTTATAGGATGAATCTGCTCTCAGCATCAGCAATTGCTTTTGTGGACATCCAATGTTTCCCAAGATTGCATTCATTTTATGATTTTTTCCTCTATACATGATTCCTTCTTTTTACACCATTGTCATGTGCTGTAAGCTTGTCAGAGATTTATTTTTTCTGAAGCAACAATGTTACTTTTATTACAAGTTGATCATTATTTCCAATTGTAGGCATCTCAGATCTCTGAGTAAAAGGAGAAACATTGTAAACAATTAAATAATCATTTTGGTTCATGAAAGATCAGGAGTCAGATATTTTAGTGTGTGATTGGTTTCATGGTG
Coding sequences of Glyma.03g167900
>Glyma.03g167900.1 sequence-type=CDS polypeptide=Glyma.03g167900.1.p locus=Glyma.03g167900 ID=Glyma.03g167900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGAAGAAAGTGCGTTGAGGCCGATGGACGCTGAGCAACTGAGAGAGCAGGCTCATAAGATGGTCGACTTCATTGCCGATTACTACAAAACCATCGAAGACTTCCCCGTTCTAAGCCAAGTTCAGCCAGGTTATCTTGGGAAGCTTTTACCAGATTCTGCACCTGATTCTCCTGAGTCATTGCAAAATGTTTTGGATGATGTGCAGGAAAAAATACTGCCAGGGGTGACGCACTGGCAAAGCCCAAATTATTTTGCGTATTTTCCTTCCAACAGTAGCATTGCTGGGTTTCTAGGAGAGATGCTCAGTGCGGGTCTTAACATCGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCAACTGAACTTGAGACGATTGTTCTGGATTGGCTTGCAAAGGCTTTCCAGCTGCCTGATTATTTCTATTCTAGTGGGAAAGGTGGTGGAGTTATACAGGGAACTGCAAGTGAAGCTGTACTAGTTGTCTTATTAGCTGCCCGTGACAAGATCTTAAGGAGGGTTGGAAGGAATGCCCTTCCTAAGCTTGTGATGTATGCATCTGATCAAACACACTCTGCTTTACTAAAAGCTTGCCAGATAGCAGGAATTAATCCAGAGCTATGCAGGTTGCTTAAAACTGATTCTTCCACAAATTATGCACTTTCTCCTGATGTGCTTTCTGAAGCAATTTCAAATGACATTGCTGGCGGTCTTGTACCCTTTTTCTTATGTGCTACTGTTGGTACCACTTCATCAACAGCTGTTGATCCTCTGCCTGCATTGGGAAAAATTGCCAAGACCAACAAACTTTGGTTTCATGTGGATGCTGCTTATGCTGGAAGTGCTTGTGTATGTCCAGAGTACCGCCACTGCATTGATGGTGTTGAAGAAGCCGACTCATTTAACATGAATGCACATAAATGGTTCCTGACTAACTTTGACTGTTCATTACTTTGGGTTAAGGACAGAAGTTCTCTGATTCAATCATTGTCTACAAATCCTGAATTTCTGAAAAACAAGGCCTCTCAAGGAAACATGGTCATAGATTACAAAGATTGGCAAATTCCTCTTGGACGTCGCTTTAGATCATTAAAACTGTGGATGGTGTTGCGACTCTATGGATTGGATGGTCTGCGAAGTCACATAAGAAACCACATTGAGTTGGCTGCTAACTTTGAGGAGCTTGTACGTCAGGACACAAGATTCAAGGTTGTTGCACCTCGCACGTTCTCTTTAGTTTGTTTTCGGCTGCTGCCCCATCCCAATTCTGCAGATCATGGGAATAAGCTAAATAGTGATCTACTCGACTCAGTAAATTCAACTGGAAATGCTTTCATAACACACACGGTTCTATCAGGGGAGTACATTCTACGTTTTGCAGTAGGAGCACCATTGACAGAAAGGAGGCATGTCAATATGGCATGGCAAATTTTGCAAGATAAAGCCACTGCTCTACTTGAGAGTTTATAG

>Glyma.03g167900.2 sequence-type=CDS polypeptide=Glyma.03g167900.2.p locus=Glyma.03g167900 ID=Glyma.03g167900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGAAGAAAGTGCGTTGAGGCCGATGGACGCTGAGCAACTGAGAGAGCAGGCTCATAAGATGGTCGACTTCATTGCCGATTACTACAAAACCATCGAAGACTTCCCCGTTCTAAGCCAAGTTCAGCCAGGTTATCTTGGGAAGCTTTTACCAGATTCTGCACCTGATTCTCCTGAGTCATTGCAAAATGTTTTGGATGATGTGCAGGAAAAAATACTGCCAGGGGTGACGCACTGGCAAAGCCCAAATTATTTTGCGTATTTTCCTTCCAACAGTAGCATTGCTGGGTTTCTAGGAGAGATGCTCAGTGCGGGTCTTAACATCGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCAACTGAACTTGAGACGATTGTTCTGGATTGGCTTGCAAAGGCTTTCCAGCTGCCTGATTATTTCTATTCTAGTGGGAAAGGTGGTGGAGTTATACAGGGAACTGCAAGTGAAGCTGTACTAGTTGTCTTATTAGCTGCCCGTGACAAGATCTTAAGGAGGGTTGGAAGGAATGCCCTTCCTAAGCTTGTGATGTATGCATCTGATCAAACACACTCTGCTTTACTAAAAGCTTGCCAGATAGCAGGAATTAATCCAGAGCTATGCAGGTTGCTTAAAACTGATTCTTCCACAAATTATGCACTTTCTCCTGATGTGCTTTCTGAAGCAATTTCAAATGACATTGCTGGCGGTCTTGTACCCTTTTTCTTATGTGCTACTGTTGGTACCACTTCATCAACAGCTGTTGATCCTCTGCCTGCATTGGGAAAAATTGCCAAGACCAACAAACTTTGGTTTCATGTGGATGCTGCTTATGCTGGAAGTGCTTGTGTATGTCCAGAGTACCGCCACTGCATTGATGGTGTTGAAGAAGCCGACTCATTTAACATGAATGCACATAAATGGTTCCTGACTAACTTTGACTGTTCATTACTTTGGGTTAAGGACAGAAGTTCTCTGATTCAATCATTGTCTACAAATCCTGAATTTCTGAAAAACAAGGCCTCTCAAGGAAACATGGTCATAGATTACAAAGATTGGCAAATTCCTCTTGGACGTCGCTTTAGATCATTAAAACTGTGGATGGTGTTGCGACTCTATGGATTGGATGGTCTGCGAAGTCACATAAGAAACCACATTGAGTTGGCTGCTAACTTTGAGGAGCTTGTACGTCAGGACACAAGATTCAAGGTTGTTGCACCTCGCACGTTCTCTTTAGTTTGTTTTCGGCTGCTGCCCCATCCCAATTCTGCAGATCATGGGAATAAGCTAAATAGTGATCTACTCGACTCAGTAAATTCAACTGGAAATGCTTTCATAACACACACGGTTCTATCAGGGGAGTACATTCTACGTTTTGCAGTAGGAGCACCATTGACAGAAAGGAGGCATGTCAATATGGCATGGCAAATTTTGCAAGATAAAGCCACTGCTCTACTTGAGAGTTTATAG
Predicted protein sequences of Glyma.03g167900
>Glyma.03g167900.1.p sequence-type=predicted peptide transcript=Glyma.03g167900.1 locus=Glyma.03g167900 ID=Glyma.03g167900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEESALRPMDAEQLREQAHKMVDFIADYYKTIEDFPVLSQVQPGYLGKLLPDSAPDSPESLQNVLDDVQEKILPGVTHWQSPNYFAYFPSNSSIAGFLGEMLSAGLNIVGFSWITSPAATELETIVLDWLAKAFQLPDYFYSSGKGGGVIQGTASEAVLVVLLAARDKILRRVGRNALPKLVMYASDQTHSALLKACQIAGINPELCRLLKTDSSTNYALSPDVLSEAISNDIAGGLVPFFLCATVGTTSSTAVDPLPALGKIAKTNKLWFHVDAAYAGSACVCPEYRHCIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRSSLIQSLSTNPEFLKNKASQGNMVIDYKDWQIPLGRRFRSLKLWMVLRLYGLDGLRSHIRNHIELAANFEELVRQDTRFKVVAPRTFSLVCFRLLPHPNSADHGNKLNSDLLDSVNSTGNAFITHTVLSGEYILRFAVGAPLTERRHVNMAWQILQDKATALLESL*

>Glyma.03g167900.2.p sequence-type=predicted peptide transcript=Glyma.03g167900.2 locus=Glyma.03g167900 ID=Glyma.03g167900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEESALRPMDAEQLREQAHKMVDFIADYYKTIEDFPVLSQVQPGYLGKLLPDSAPDSPESLQNVLDDVQEKILPGVTHWQSPNYFAYFPSNSSIAGFLGEMLSAGLNIVGFSWITSPAATELETIVLDWLAKAFQLPDYFYSSGKGGGVIQGTASEAVLVVLLAARDKILRRVGRNALPKLVMYASDQTHSALLKACQIAGINPELCRLLKTDSSTNYALSPDVLSEAISNDIAGGLVPFFLCATVGTTSSTAVDPLPALGKIAKTNKLWFHVDAAYAGSACVCPEYRHCIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRSSLIQSLSTNPEFLKNKASQGNMVIDYKDWQIPLGRRFRSLKLWMVLRLYGLDGLRSHIRNHIELAANFEELVRQDTRFKVVAPRTFSLVCFRLLPHPNSADHGNKLNSDLLDSVNSTGNAFITHTVLSGEYILRFAVGAPLTERRHVNMAWQILQDKATALLESL*






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