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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G58180.1 | AT | ARM repeat superfamily protein | JGI | N/A | IEA |
| GO:0008612 | GO-bp | peptidyl-lysine modification to peptidyl-hypusine | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0004497 | GO-mf | monooxygenase activity | EnsemblGenomes | N/A | IEA |
| GO:0005488 | GO-mf | binding | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0019135 | GO-mf | deoxyhypusine monooxygenase activity | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG0567 | KOG | HEAT repeat-containing protein | JGI | N/A | IEA |
| PTHR12697 | Panther | PBS LYASE HEAT-LIKE PROTEIN | JGI | N/A | IEA |
| PF03130 | PFAM | PBS lyase HEAT-like repeat | JGI | N/A | IEA |
| PWY-5905 | SoyCyc9 | hypusine biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-55127 | SoyCyc9-rxn | deoxyhypusine monooxygenase | Plant Metabolic Network | ISS |
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Glyma.03g161100 not represented in the dataset |
Glyma.03g161100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma03g31800 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g161100.1 sequence-type=CDS polypeptide=Glyma.03g161100.1.p locus=Glyma.03g161100 ID=Glyma.03g161100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGAAGTTCCTGTGCGAGTTGTTGCTGGATTCCTCGCAGCCAATTTCCGAGCGTTTCAGAGCGCTCTTCTCTCTCCGCAACCTCAAAGGCCCCGTCCCTCGCAACGCCCTTATTTGCGCCACAAGGGATTCGTCGAATTTGTTGGCGCACGAAGCTGCATTTGCGTTGGGTCAAATGCAGGATTTGGAAGCCATCCCTGCTTTGGCCTCAGTTCTCAATGATCTTTCTTTGCATCCCATTGTTCGCCATGAGGCAGCTGAGGCTCTGGGTGCTATTGGTTCAGATGGTAATGTTCCTTTCCTGAAAAGTAGTTTGGATTTGGATCCAGCCGAGGAGGTTCGAGAAACGTGTGAATTAGCCCTTCAACGAATTCAGAATTTAAAAGATGCTGGTAATACTGATGAATTGTCTGCAAATGGTGTATCTCCTTTTAAGTCTGTTGATCCAGCTGCACCAGCGATCTCTGGTTCTTCTGTTGATCAACTAAGGCAAGTGCTTCTTGATGAAGAAAAAGGGATGTATGAGCGCTATGCAGCTCTTTTTGCACTTCGAAATGATGGTGGAAATGAAGCTGTTACCGCTATCATTGATTCCTTGGGCTCAAAAAGTGCTCTACTGCGCCATGAGGTTGCATATGTTTTGGGTCAATTGCAAGACAAAGCTGCTTCAGCTGCTCTATCCAATATACTTAAAGATGTGAATGAGCATCCAATGGTTAGGCATGAGGCTGCTGAAGCTCTTGGTTCAATTGCAGATGACCAATGTGTAGCCCTTCTTGAGGAGTTTTCGGCAGATCCAGAGCCTCTTGTCTCACAAAGTTGTCAAGTTGCTCTAAGCATGCTAGAATTTGAACGATCAGGGAAATCATTCGAGTTCCTGTTCATGCGCACTCCAACTGTGCATTAA
>Glyma.03g161100.1.p sequence-type=predicted peptide transcript=Glyma.03g161100.1 locus=Glyma.03g161100 ID=Glyma.03g161100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEKFLCELLLDSSQPISERFRALFSLRNLKGPVPRNALICATRDSSNLLAHEAAFALGQMQDLEAIPALASVLNDLSLHPIVRHEAAEALGAIGSDGNVPFLKSSLDLDPAEEVRETCELALQRIQNLKDAGNTDELSANGVSPFKSVDPAAPAISGSSVDQLRQVLLDEEKGMYERYAALFALRNDGGNEAVTAIIDSLGSKSALLRHEVAYVLGQLQDKAASAALSNILKDVNEHPMVRHEAAEALGSIADDQCVALLEEFSADPEPLVSQSCQVALSMLEFERSGKSFEFLFMRTPTVH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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