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Report for Sequence Feature Glyma.03g161000

Feature Type:gene_model
Chromosome:Gm03
Start:37612023
stop:37615718
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g161000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58170.1AT BET1P/SFT1P-like protein 14A JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG3385 KOG V-SNARE JGI N/AIEA
PTHR12791Panther GOLGI SNARE BET1-RELATED JGI N/AIEA
PTHR12791:SF5Panther BET1-LIKE SNARE 1-1-RELATED JGI N/AIEA
PF05739PFAM SNARE domain JGI N/AIEA

Expression Patterns of Glyma.03g161000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g161000
ParalogEvidenceComments
Glyma.19g162700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g161000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g31790 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g161000
>Glyma.03g161000.2 sequence-type=transcript locus=Glyma.03g161000 ID=Glyma.03g161000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGTTGGAGGCGTGATATTAAACACGCGTCAAGCAGTGTCGGACCCTATATAAACCCCACCGCCAATCTCTTCCTTCTTCGTCTGTTCTGCGTTCACCTTTGCTCAGTTTCGTAGTAAAATCAAAGTTCCGCTTCCCTCCGCAGAGACTGGACGATCTCGCGAGCCATGAATGCTAGACGAGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCATCTGTTTACTCCTCTTCTCATGAAATTGATGAACATGATAATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGATTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATCGAATGGGGAATGATATGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTTGTTGTGCTCTTTCTTATAATATACTACCTCACTAGGTAATTTGATCTTTCATTCAACTGCCAGCTTTATGTTAGGTCCAAGAGGACGCTATTTCCTCTATTACTGTAATTAATGCTACTACCTCTGGCTCTGTAAGATAACTGTTCTGTATAAAGGTTTGATGTTTTAAACAGGTATTGAATCCAACGAGTAATGTCCATATCCGATTTGCGGTATATTTTCCCTTTCCTGTTGATTTAGGATACTCCTGTTTAACCATATGGAAAATGAAAAGGAAAGTGTATTTGACGTTT
Coding sequences of Glyma.03g161000
>Glyma.03g161000.1 sequence-type=CDS polypeptide=Glyma.03g161000.1.p locus=Glyma.03g161000 ID=Glyma.03g161000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGCTAGACGAGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCATCTGTTTACTCCTCTTCTCATGAAATTGATGAACATGATAATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGATTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATCGAATGGGGAATGATATGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTTGTTGTGCTCTTTCTTATAATATACTACCTCACTAGGTATTGA

>Glyma.03g161000.2 sequence-type=CDS polypeptide=Glyma.03g161000.2.p locus=Glyma.03g161000 ID=Glyma.03g161000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGCTAGACGAGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCATCTGTTTACTCCTCTTCTCATGAAATTGATGAACATGATAATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGATTATCAGGTGATATAAATGAGGAGGTGGATAGCCATAACCGCATGCTGGATCGAATGGGGAATGATATGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTTGTTGTGCTCTTTCTTATAATATACTACCTCACTAGGTAA
Predicted protein sequences of Glyma.03g161000
>Glyma.03g161000.1.p sequence-type=predicted peptide transcript=Glyma.03g161000.1 locus=Glyma.03g161000 ID=Glyma.03g161000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNARRDNRNNRVSLFDGIEEGGIRASSVYSSSHEIDEHDNEQALDGLQDRVNLLKRLSGDINEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFETKSNQRMFTLVASFVVLFLIIYYLTRY*

>Glyma.03g161000.2.p sequence-type=predicted peptide transcript=Glyma.03g161000.2 locus=Glyma.03g161000 ID=Glyma.03g161000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNARRDNRNNRVSLFDGIEEGGIRASSVYSSSHEIDEHDNEQALDGLQDRVNLLKRLSGDINEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFETKSNQRMFTLVASFVVLFLIIYYLTR*






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