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Report for Sequence Feature Glyma.03g156500

Feature Type:gene_model
Chromosome:Gm03
Start:37163255
stop:37168119
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g156500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G63250.1AT homocysteine methyltransferase 2 JGI N/AIEA
GO:0008898GO-mf homocysteine S-methyltransferase activity JGI N/AIEA
KOG1579 KOG Homocysteine S-methyltransferase JGI N/AIEA
PTHR21091Panther METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED JGI N/AIEA
PTHR21091:SF6Panther HOMOCYSTEINE S-METHYLTRANSFERASE 3 JGI N/AIEA
PF02574PFAM Homocysteine S-methyltransferase JGI N/AIEA
PWY-6933SoyCyc9 seleno-amino acid detoxification and volatilization III Plant Metabolic Network ISS
GN7V-55396SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.03g156500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g156500 not represented in the dataset
Glyma.03g156500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g156500
ParalogEvidenceComments
Glyma.19g158800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g156500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g31281 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g156500
>Glyma.03g156500.2 sequence-type=transcript locus=Glyma.03g156500 ID=Glyma.03g156500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAATGTCGTCGTTGATAACAGATTTGCTCCGTGAAACCGGCGGCTCCGCCGTCATCGACGGCGGTCTCGCGACGGAGCTGGAGCGCCATGGCGACGACCTCAACGATCCCCTATGGAGCGCCAAATGCCTGTTTTCCTCCCCTCACCTGATTCGCCAGGTGCACCTTGATTACCTGGAAAATGGTGCAGACATTATAATCACAGCATCTTACCAAGCCACCATTCAAGGCTTTAAAGCCAAAGGTTATTCTGATGAAGAGAGTGAAGCCTTGCTCAAGAGGAGTGCCGAAATTGCATTCGAGGCACGTGAAGTTTACGATAAAAATTGTGCTGGATGCTGTTCGGGTGATGGGGAGGATGATGGTAGAATCCTCAAGCAACGGCCTATCCTGGTTGCAGCATTGGTGGGGAGCTATGGAGCTTATTTGGCCGATGGATCAGGGTACAGTGGGGATTATGGTGATGCTATCACGGTGGAAATTCGGAGAAGAGTTCAAATTTTAGCAGATTCAAGTGCTGACCTGCTTGCATTTGAAACAGTGTCCAATAAGCTTGAAGCTGAGGCTTTTGCTCAGCTTCTGGAAGAAGAGGACATAAAGATTCCAGCATGGTTTTCTTTTAACTCATGGAGTTAATGTTGTTAGTGGTGATTCTTTAATGGAATGTGGCTCTATTGCTGAATCAGGTGACTACAAAACCAATTGTTATATATCCAAACAGTGGGGAAACTTACGATGCTGACCTAAAGGAGTGGGTGCAAAATACTGGTGTTACAGATGAAGATTTTATCTCATATGTAAATAAATGGTGAGTTAGGAGCTTCCTGTGTAGGTGGCTGTTGCAGAACGACTCCAGATACTATTAGGAAGATATACAGGACACTGTCTAGTAGTCAATCAATCTAATTTACTTGTCAAGAAGGCTGGCAGCTGCACTGGATCAAGTTGCTTCTGACTAAGATTGGCAATAAATATATATGATATGATTTGGCTAATTAGCCAAGATATCCATTATGAAATATTGGTCAATGCAACTTGGAATATGCTTTGCCCTTGGAGCTAACAACCTGAAAATCGCAATTTGTGATCAAGAGAAAGATGCGTGTTCTCCTTCTCGTCGATTTTGaaaaaaaaaaaaaaaaaagaaCATGGCAACTTATGCAGAATTTTAGTAATTGTTATGTTTATTATAACAGAATTTAGGATTATTAGTATCTTAAACATTTTCCCAACCAAAAATCATGTTGACTGGAGACTCACGAGCTGAACACTCATGGTCTCCTATCTTTTTGTCTGTTTTGTTCCttatttttttacgtgcaatattttcatttttaa

>Glyma.03g156500.3 sequence-type=transcript locus=Glyma.03g156500 ID=Glyma.03g156500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAATGTCGTCGTTGATAACAGATTTGCTCCGTGAAACCGGCGGCTCCGCCGTCATCGACGGCGGTCTCGCGACGGAGCTGGAGCGCCATGGCGACGACCTCAACGATCCCCTATGGAGCGCCAAATGCCTGTTTTCCTCCCCTCACCTGATTCGCCAGGTGCACCTTGATTACCTGGAAAATGGTGCAGACATTATAATCACAGCATCTTACCAAGCCACCATTCAAGGCTTTAAAGCCAAAGGTTATTCTGATGAAGAGAGTGAAGCCTTGCTCAAGAGGAGTGCCGAAATTGCATTCGAGGCACGTGAAGTTTACGATAAAAATTGTGCTGGATGCTGTTCGGGTGATGGGGAGGATGATGGTAGAATCCTCAAGCAACGGCCTATCCTGGTTGCAGCATTGGTGGGGAGCTATGGAGCTTATTTGGCCGATGGATCAGGGTACAGTGGGGATTATGGTGATGCTATCACGGTGGAAATTCGGAGAAGAGTTCAAATTTTAGCAGATTCAAGTGCTGACCTGCTTGCATTTGAAACAGTGTCCAATAAGCTTGAAGCTGAGGCTTTTGCTCAGCTTCTGGAAGAAGAGGACATAAAGATTCCAGCATGGTTTTCTTTTAACTCATGGAGTTAATGTTGTTAGTGGTGATTCTTTAATGGAATGTGGCTCTATTGCTGAATCAGGTGACTACAAAACCAATTGTTATATATCCAAACAGTGGGGAAACTTACGATGCTGACCTAAAGGAGTGGGTGGTGGCTGTTGCAGAACGACTCCAGATACTATTAGGAAGATATACAGGACACTGTCTAGTAGTCAATCAATCTAATTTACTTGTCAAGAAGGCTGGCAGCTGCACTGGATCAAGTTGCTTCTGACTAAGATTGGCAATAAATATATATGATATGATTTGGCTAATTAGCCAAGATATCCATTATGAAATATTGGTCAATGCAACTTGGAATATGCTTTGCCCTTGGAGCTAACAACCTGAAAATCGCAATTTGTGATCAAGAGAAAGATGCGTGTTCTCCTTCTCGTCGATTTTGaaaaaaaaaaaaaaaaaagaaCATGGCAACTTATGCAGAATTTTAGTAATTGTTATGTTTATTATAACAGAATTTAGGATTATTAGTATCTTAAACATTTTCCCAACCAAAAATCATGTTGACTGGAGACTCACGAGCTGAACACTCATGGTCTCCTATCTTTTTGTCTGTTTTGTTCCttatttttttacgtgca
Coding sequences of Glyma.03g156500
>Glyma.03g156500.1 sequence-type=CDS polypeptide=Glyma.03g156500.1.p locus=Glyma.03g156500 ID=Glyma.03g156500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGTCGTTGATAACAGATTTGCTCCGTGAAACCGGCGGCTCCGCCGTCATCGACGGCGGTCTCGCGACGGAGCTGGAGCGCCATGGCGACGACCTCAACGATCCCCTATGGAGCGCCAAATGCCTGTTTTCCTCCCCTCACCTGATTCGCCAGGTGCACCTTGATTACCTGGAAAATGGTGCAGACATTATAATCACAGCATCTTACCAAGCCACCATTCAAGGCTTTAAAGCCAAAGGTTATTCTGATGAAGAGAGTGAAGCCTTGCTCAAGAGGAGTGCCGAAATTGCATTCGAGGCACGTGAAGTTTACGATAAAAATTGTGCTGGATGCTGTTCGGGTGATGGGGAGGATGATGGTAGAATCCTCAAGCAACGGCCTATCCTGGTTGCAGCATTGGTGGGGAGCTATGGAGCTTATTTGGCCGATGGATCAGGGTACAGTGGGGATTATGGTGATGCTATCACGGTGGAAATTCGGAGAAGAGTTCAAATTTTAGCAGATTCAAGTGCTGACCTGCTTGCATTTGAAACAGTGTCCAATAAGCTTGAAGCTGAGCATGGTTTTCTTTTAACTCATGGAGTTAATGTTGTTAGTGGTGATTCTTTAATGGAATGTGGCTCTATTGCTGAATCAGGTAATAAAGTTGTCGCTGTTGGAATCTACTGTACCCCACCAAGATTTATACATGGTCTAATTGTTTTGCTTAAGAGGGTGACTACAAAACCAATTGTTATATATCCAAACAGTGGGGAAACTTACGATGCTGACCTAAAGGAGTGGGTGCAAAATACTGGTGTTACAGATGAAGATTTTATCTCATATGTAAATAAATGGTGA

>Glyma.03g156500.2 sequence-type=CDS polypeptide=Glyma.03g156500.2.p locus=Glyma.03g156500 ID=Glyma.03g156500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGTCGTTGATAACAGATTTGCTCCGTGAAACCGGCGGCTCCGCCGTCATCGACGGCGGTCTCGCGACGGAGCTGGAGCGCCATGGCGACGACCTCAACGATCCCCTATGGAGCGCCAAATGCCTGTTTTCCTCCCCTCACCTGATTCGCCAGGTGCACCTTGATTACCTGGAAAATGGTGCAGACATTATAATCACAGCATCTTACCAAGCCACCATTCAAGGCTTTAAAGCCAAAGGTTATTCTGATGAAGAGAGTGAAGCCTTGCTCAAGAGGAGTGCCGAAATTGCATTCGAGGCACGTGAAGTTTACGATAAAAATTGTGCTGGATGCTGTTCGGGTGATGGGGAGGATGATGGTAGAATCCTCAAGCAACGGCCTATCCTGGTTGCAGCATTGGTGGGGAGCTATGGAGCTTATTTGGCCGATGGATCAGGGTACAGTGGGGATTATGGTGATGCTATCACGGTGGAAATTCGGAGAAGAGTTCAAATTTTAGCAGATTCAAGTGCTGACCTGCTTGCATTTGAAACAGTGTCCAATAAGCTTGAAGCTGAGGCTTTTGCTCAGCTTCTGGAAGAAGAGGACATAAAGATTCCAGCATGGTTTTCTTTTAACTCATGGAGTTAA

>Glyma.03g156500.3 sequence-type=CDS polypeptide=Glyma.03g156500.3.p locus=Glyma.03g156500 ID=Glyma.03g156500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGTCGTTGATAACAGATTTGCTCCGTGAAACCGGCGGCTCCGCCGTCATCGACGGCGGTCTCGCGACGGAGCTGGAGCGCCATGGCGACGACCTCAACGATCCCCTATGGAGCGCCAAATGCCTGTTTTCCTCCCCTCACCTGATTCGCCAGGTGCACCTTGATTACCTGGAAAATGGTGCAGACATTATAATCACAGCATCTTACCAAGCCACCATTCAAGGCTTTAAAGCCAAAGGTTATTCTGATGAAGAGAGTGAAGCCTTGCTCAAGAGGAGTGCCGAAATTGCATTCGAGGCACGTGAAGTTTACGATAAAAATTGTGCTGGATGCTGTTCGGGTGATGGGGAGGATGATGGTAGAATCCTCAAGCAACGGCCTATCCTGGTTGCAGCATTGGTGGGGAGCTATGGAGCTTATTTGGCCGATGGATCAGGGTACAGTGGGGATTATGGTGATGCTATCACGGTGGAAATTCGGAGAAGAGTTCAAATTTTAGCAGATTCAAGTGCTGACCTGCTTGCATTTGAAACAGTGTCCAATAAGCTTGAAGCTGAGGCTTTTGCTCAGCTTCTGGAAGAAGAGGACATAAAGATTCCAGCATGGTTTTCTTTTAACTCATGGAGTTAA
Predicted protein sequences of Glyma.03g156500
>Glyma.03g156500.1.p sequence-type=predicted peptide transcript=Glyma.03g156500.1 locus=Glyma.03g156500 ID=Glyma.03g156500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSLITDLLRETGGSAVIDGGLATELERHGDDLNDPLWSAKCLFSSPHLIRQVHLDYLENGADIIITASYQATIQGFKAKGYSDEESEALLKRSAEIAFEAREVYDKNCAGCCSGDGEDDGRILKQRPILVAALVGSYGAYLADGSGYSGDYGDAITVEIRRRVQILADSSADLLAFETVSNKLEAEHGFLLTHGVNVVSGDSLMECGSIAESGNKVVAVGIYCTPPRFIHGLIVLLKRVTTKPIVIYPNSGETYDADLKEWVQNTGVTDEDFISYVNKW*

>Glyma.03g156500.2.p sequence-type=predicted peptide transcript=Glyma.03g156500.2 locus=Glyma.03g156500 ID=Glyma.03g156500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSLITDLLRETGGSAVIDGGLATELERHGDDLNDPLWSAKCLFSSPHLIRQVHLDYLENGADIIITASYQATIQGFKAKGYSDEESEALLKRSAEIAFEAREVYDKNCAGCCSGDGEDDGRILKQRPILVAALVGSYGAYLADGSGYSGDYGDAITVEIRRRVQILADSSADLLAFETVSNKLEAEAFAQLLEEEDIKIPAWFSFNSWS*

>Glyma.03g156500.3.p sequence-type=predicted peptide transcript=Glyma.03g156500.3 locus=Glyma.03g156500 ID=Glyma.03g156500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSLITDLLRETGGSAVIDGGLATELERHGDDLNDPLWSAKCLFSSPHLIRQVHLDYLENGADIIITASYQATIQGFKAKGYSDEESEALLKRSAEIAFEAREVYDKNCAGCCSGDGEDDGRILKQRPILVAALVGSYGAYLADGSGYSGDYGDAITVEIRRRVQILADSSADLLAFETVSNKLEAEAFAQLLEEEDIKIPAWFSFNSWS*






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