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Report for Sequence Feature Glyma.03g155000

Feature Type:gene_model
Chromosome:Gm03
Start:37030174
stop:37035017
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g155000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G03140.1AT splicing factor Prp18 family protein JGI N/AIEA
GO:0000350GO-bp generation of catalytic spliceosome for second transesterification step EnsemblGenomesN/AIEA
GO:0008380GO-bp RNA splicing EnsemblGenomesN/AIEA
GO:0008380GO-bp RNA splicing JGI N/AIEA
GO:0071048GO-bp nuclear retention of unspliced pre-mRNA at the site of transcription EnsemblGenomesN/AIEA
GO:0005681GO-cc spliceosomal complex EnsemblGenomesN/AIEA
GO:0005681GO-cc spliceosomal complex JGI N/AIEA
GO:0005682GO-cc U5 snRNP EnsemblGenomesN/AIEA
GO:0046540GO-cc U4/U6 x U5 tri-snRNP complex EnsemblGenomesN/AIEA
GO:0071021GO-cc U2-type post-spliceosomal complex EnsemblGenomesN/AIEA
GO:0000386GO-mf second spliceosomal transesterification activity EnsemblGenomesN/AIEA
KOG2808 KOG U5 snRNP-associated RNA splicing factor JGI N/AIEA
PTHR13007Panther PRE-MRNA SPLICING FACTOR-RELATED JGI N/AIEA
PTHR13007:SF6Panther JGI N/AIEA
PF02840PFAM Prp18 domain JGI N/AIEA
PF08799PFAM pre-mRNA processing factor 4 (PRP4) like JGI N/AIEA

Expression Patterns of Glyma.03g155000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g155000
ParalogEvidenceComments
Glyma.19g157200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g155000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g31130 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g155000
>Glyma.03g155000.1 sequence-type=CDS polypeptide=Glyma.03g155000.1.p locus=Glyma.03g155000 ID=Glyma.03g155000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACCTACTGAAGCAAGAGCTTCTCAAGAAGCGCCAATCCCTGGCGCAAGACACCGGCGGCAAGAAATTCTTCAAGCGCTCCGAGATCCAGCAGAAGGAAATCCAGAAACTCCGGGAGCAAGAGAAGCGCGAATTGGAAGCCAAGTCACAGAAGCGCCTCGCAACGTCCTCCGACAACGCTGCCACCGCTCCGTCCTCCTCATCCACCGCCTCCGCCTCGGCCTCTTCCACAATCGCATCCTCCTCCGCCGCCTCCCTCACCAACGAGCAAAACATCGACAACCTCGTCCTCCCAAAGCCCGAAGTCATCCGCCGCCTCCGCTTCCTCAAGCAGCCGGTCACGCTCTTCGGCGAAGACGACGACGCCAGGCTGGACCGCCTGAAGTATGTCCTCAAGGCCGGCGTCTTCGAGGTTGACAGCGACATGACGGAGGGGCAGACCAACGATTTCCTGCGCGACATCGCGGAGCTCAGGAAGCGCCAGAAGACCGGGATTCTCGGCGAGAGGAAGCGCCAGAAGGCCGACGACGGCGCCGCTGAGGACCGCGAGGGCGGCGCCGGAGATGATGACTTGAGTGACTGCGGCGGCTCCGATGGTGCCGATGCGGACAAGGACTTGAAGCGGATGAAGGCGAATTTCGAGGAGCTTTGCGATGAGGATAAGATTCTGGTGTTCTTTAAGAAGCTGTTGAATGAGTGGAAGCAGGAGTTGCGCGAGATGCCTGAGGCGGAGAAGCGCACGGCCAAGGGGAAGTCCATGGTTGCCACTTTCAAGCAGTGTGCGCGTTACTTGAACCCGCTGTTTAAGTTTTGCAGGAAGAAGGTTCTTCCGGATGACATTCGACAGGCGTTATTGTTGATGGTTGAATGCTGTATGAGGCGAGATTATCTGGCTGCAATGGACCATTATATCAAGCTGGCTATCGGGAATGCACCCTGGCCTATTGGTGTCACTATGGTTGGTATTCACGAAAGATCTGCCCGTGAAAAGATCTACACCAACAGTGTTGCTCACATCATGAATGATGAGACCACTCGCAAATACTTGCAATCTGTGAAGAGATTAATGACATTTTGCCAACGCCGTTATCCGACATTGCCTTCTAAAGCCGTTGAGTTCAATAGTTTGGCAAATGGCAGTGATTTGCATTCACTTCTAGCAGAAGAGAGATTTAGTGGGGGCAATCAGGCGGCATCTGAAGAGAGGCTTAGGATAATGCCTGCTCCAAGAGACAGCTAG
Predicted protein sequences of Glyma.03g155000
>Glyma.03g155000.1.p sequence-type=predicted peptide transcript=Glyma.03g155000.1 locus=Glyma.03g155000 ID=Glyma.03g155000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLLKQELLKKRQSLAQDTGGKKFFKRSEIQQKEIQKLREQEKRELEAKSQKRLATSSDNAATAPSSSSTASASASSTIASSSAASLTNEQNIDNLVLPKPEVIRRLRFLKQPVTLFGEDDDARLDRLKYVLKAGVFEVDSDMTEGQTNDFLRDIAELRKRQKTGILGERKRQKADDGAAEDREGGAGDDDLSDCGGSDGADADKDLKRMKANFEELCDEDKILVFFKKLLNEWKQELREMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALLLMVECCMRRDYLAAMDHYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTLPSKAVEFNSLANGSDLHSLLAEERFSGGNQAASEERLRIMPAPRDS*






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