SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G03220.1 | AT | Eukaryotic aspartyl protease family protein | JGI | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | EnsemblGenomes | N/A | IEA |
| GO:0030163 | GO-bp | protein catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0004190 | GO-mf | aspartic-type endopeptidase activity | EnsemblGenomes | N/A | IEA |
| KOG1339 | KOG | Aspartyl protease | JGI | N/A | IEA |
| PTHR13683 | Panther | ASPARTYL PROTEASES | JGI | N/A | IEA |
| PTHR13683:SF100 | Panther | ASPARTYL PROTEASE-LIKE PROTEIN-RELATED | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| GIP1 | putative aspartic proteinase GIP1 |
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Glyma.03g151900 not represented in the dataset |
Glyma.03g151900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma03g30860 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g151900.1 sequence-type=CDS polypeptide=Glyma.03g151900.1.p locus=Glyma.03g151900 ID=Glyma.03g151900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCTCCTCCTCTTCCATCTCTCTGCAACTTCAACTTGGCGATACTCTTCCTCTTCCTCACACCCACTTTCCAAATCCCCCTCATAGCCCCAATCTCAAAAGACGACACCACCCAACTCTACACTCTCTCCGTGTTCCTGAAAACCCCACTCCAACCCACAAAACTCCACCTCCACCTTGGCTCCTCCCTCAGCTGGGTCCTCTGCGACTCCACCTACACCTCCTCCTCCTCCCACCACATCCCCTGCAACACCCCTCTCTGCAACTCCTTCCCCTCCAACGCATGCTCCAACAACTCCTCCCTCTGCGCCCTCTTCCCCGAAAACCCCGTCACAAGAAACACCCTCCTGGACACCGCCCTCATCGATTCCCTCGCTCTTCCCACCTACGACGCTTCCTCCTCTCTCGTCCTCATCTCCGACTTCATCTTCTCCTGCGCCACGGCCCATCTTCTCCAGGGCCTCGCCGCCAATGCATTGGGCCTCGCCTCATTGGGCCGGTCCAACTACTCCCTCCCGGCCCAAATCAGCACTTCATTAACCTCACCTCGTTCTTTCACTCTCTGCCTGCCAGCTTCATCAGCCAACACAGGGGCAGCTATATTCGCCTCCACTGCCTCCTCATTTCTTTTCTCTTCCAAAATTGACCTTACTTACACACAACTCATCGTAAACCCCGTTGCCGACACCGTCGTCACCGACAATCCACAACCGTCTGATGAGTATTTCATAAACTTAACCTCAATCAAAATCAACGGTAAGCCTCTTTATATCAACTCCTCCATCCTCACCGTTGATCAGACCGGCTTCGGTGGGACCAAGATAAGCACTGCGGAACCCTACACTGTTTTAGAAACTTCTATTTACAGACTATTTGTTCAGCGTTTTGTGAACGAGTCCTCTGCTTTTAACTTGACGGTGACGGAAGCAGTTGAGCCGTTTGGCGTGTGCTACCCTGCGGGGGATCTCACGGAGACACGAGTTGGACCCGCGGTGCCCACCGTTGATCTGGTGATGCACAGCGAGGACGTGTTCTGGAGAATCTTTGGCGGGAATTCGATGGTGAGGGTTGCGAAGGGAGGAGTGGATGTGTGGTGTTTGGGTTTTGTGGACGGTGGGACCCGCGGGAGAACTCCCATTGTAATCGGAGGGCATCAGTTGGAGGATAATTTAATGCAGTTTGATCTTGACTCAAATAGATTCGGTTTCACTTCGACTCTCTTGCTTCAGGATGCCAAATGTTCTAATCTCAAGGTCAATAATTTTGCAAATGGAATTAAATAA
>Glyma.03g151900.1.p sequence-type=predicted peptide transcript=Glyma.03g151900.1 locus=Glyma.03g151900 ID=Glyma.03g151900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPPPLPSLCNFNLAILFLFLTPTFQIPLIAPISKDDTTQLYTLSVFLKTPLQPTKLHLHLGSSLSWVLCDSTYTSSSSHHIPCNTPLCNSFPSNACSNNSSLCALFPENPVTRNTLLDTALIDSLALPTYDASSSLVLISDFIFSCATAHLLQGLAANALGLASLGRSNYSLPAQISTSLTSPRSFTLCLPASSANTGAAIFASTASSFLFSSKIDLTYTQLIVNPVADTVVTDNPQPSDEYFINLTSIKINGKPLYINSSILTVDQTGFGGTKISTAEPYTVLETSIYRLFVQRFVNESSAFNLTVTEAVEPFGVCYPAGDLTETRVGPAVPTVDLVMHSEDVFWRIFGGNSMVRVAKGGVDVWCLGFVDGGTRGRTPIVIGGHQLEDNLMQFDLDSNRFGFTSTLLLQDAKCSNLKVNNFANGIK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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