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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G42120.2 | AT | DNA polymerase delta small subunit | JGI | N/A | IEA |
| GO:0006260 | GO-bp | DNA replication | EnsemblGenomes | N/A | IEA |
| GO:0006260 | GO-bp | DNA replication | JGI | N/A | IEA |
| GO:0006271 | GO-bp | DNA strand elongation involved in DNA replication | EnsemblGenomes | N/A | IEA |
| GO:0006974 | GO-bp | cellular response to DNA damage stimulus | EnsemblGenomes | N/A | IEA |
| GO:0071897 | GO-bp | DNA biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0043625 | GO-cc | delta DNA polymerase complex | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | JGI | N/A | IEA |
| GO:0003887 | GO-mf | DNA-directed DNA polymerase activity | EnsemblGenomes | N/A | IEA |
| GO:0003887 | GO-mf | DNA-directed DNA polymerase activity | JGI | N/A | IEA |
| KOG2732 | KOG | DNA polymerase delta, regulatory subunit 55 | JGI | N/A | IEA |
| PTHR10416 | Panther | DNA POLYMERASE DELTA SUBUNIT 2 | JGI | N/A | IEA |
| PF04042 | PFAM | DNA polymerase alpha/epsilon subunit B | JGI | N/A | IEA |
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Glyma.03g144600 not represented in the dataset |
Glyma.03g144600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.19g147500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma03g30080 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g144600.1 sequence-type=CDS polypeptide=Glyma.03g144600.1.p locus=Glyma.03g144600 ID=Glyma.03g144600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGAATGGAGCGAGTGCAGTGTGCCTATGCCTCTCTGGACGAAGCGTTCGAAATAGGGAAAGAGGCGTATCAGGGGCAGCAGTACAGCCAGATTTACTTCGCGCGCCTTCATTTGATGCGAACACTTTTATATTCCCTCGTTCCTCATTGGAAACCCAATTTTCCCGTGTGCACAGTGCTGGGATTGGAAGAGGGGAAGGAGTGTGTCATTGTTGGAACCCTCTATAAACACATGAAGCTCAAACCTTGCATTCTTGATGAGTATTCCAAGGAGAGATCAGTGGTTCCACTTGTCAAGCCACATAACTTCATACACCCGGATGATCACCTAGTTTTGGAAGATGAAAGCGGGCGGGTTAAGCTCAGTGGGAGTATCATTTTGCCATCTGAATATGTAACAGGAATTGTGGTTGCTTTACTTGGAAAGGAAACGGGGGCAGGTGACTTTTTGGTTCAGGATGTCCTGGATGCTGGCTTACCACCACAGATAGAATTCCCCCTTAAACCAAGGGAAGACAAGTATGTTGTTCTTGTGTCAGGGTTAAGTGTTGGGAGCAGCAGCTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACAGGGCATTTAGGAGATGAGAAGGAGCAAAGTATCGCATCACAAATTGTTCGAGTTGTCTTTGCTGGAAATTTAGTCGAGATACCTCGCAGACTTCTTAATGGACAGAATTTGGCGTCTAAGGATCTCTCAAGGATGGCTGAGCCAATAAAGGAGCTAGATATTCTGTTGAGTCAGATAGCTGCTGGCTTGCCTTTGGATATCATGCCAGGACCCAGTGACCCTGCTAATTTCTCACTACCACAGCAGTCATTGCATAGATGCCTTTTCCCTGGGTCATCGGCATATAATACTTTTAGATCTTGTACAAATCCTCATTGTTTTGAGGTTGATAATGTCAGATTTCTTGGGACATCGGGTCAAAATGTAGATGATCTTGAGAAGTATTCAGAGGCAAAAGATAAACTTGAATTCATGGAAAGGACATTAAGATGGAGGCATTTGGCACCCACTGCTCCTAATACTCTTGGATGCTATCCTTATACTGATAAGGATCCTTTCTTCATTGAGAGCTGTCCTCATGTTTACTTTGTTGGAAATCAAGATAAATTTGAAACTCGTGTCATAAAGGGATCAGAAGGGCAGTTGGTGAGACTCATATGTGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGCTAAATCTGAGGGACCTTGATTGTCATGCTCTCAGTTTTGGAACGCAATTCAGCTCATAA
>Glyma.03g144600.1.p sequence-type=predicted peptide transcript=Glyma.03g144600.1 locus=Glyma.03g144600 ID=Glyma.03g144600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGMERVQCAYASLDEAFEIGKEAYQGQQYSQIYFARLHLMRTLLYSLVPHWKPNFPVCTVLGLEEGKECVIVGTLYKHMKLKPCILDEYSKERSVVPLVKPHNFIHPDDHLVLEDESGRVKLSGSIILPSEYVTGIVVALLGKETGAGDFLVQDVLDAGLPPQIEFPLKPREDKYVVLVSGLSVGSSSSNPLQFQLLIDHITGHLGDEKEQSIASQIVRVVFAGNLVEIPRRLLNGQNLASKDLSRMAEPIKELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHRCLFPGSSAYNTFRSCTNPHCFEVDNVRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPYTDKDPFFIESCPHVYFVGNQDKFETRVIKGSEGQLVRLICVPKFSETGVAVMLNLRDLDCHALSFGTQFSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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