Glyma.03g144100

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Report for Sequence Feature Glyma.03g144100

Feature Type:	gene_model
Chromosome:	Gm03
Start:	35980681
stop:	35984809
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.03g144100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G51130.1	AT	Nse4, component of Smc5/6 DNA repair complex	JGI	N/A	IEA
GO:0006281	GO-bp	DNA repair	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0030915	GO-cc	Smc5-Smc6 complex	EnsemblGenomes	N/A	IEA
KOG2866	KOG	Uncharacterized conserved protein	JGI	N/A	IEA
PTHR16140	Panther	UNCHARACTERIZED	JGI	N/A	IEA
PF08743	PFAM	Nse4 C-terminal	JGI	N/A	IEA

Expression Patterns of Glyma.03g144100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g144100 not represented in the dataset	Glyma.03g144100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.03g144100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma03g30010	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.03g144100

Limit To All Plant Sequences

>Glyma.03g144100.2 sequence-type=transcript locus=Glyma.03g144100 ID=Glyma.03g144100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTCACCTCAAACACGACCTGTTAAGGAGTATATAAAAGCAGCATTTAAAACTCTCAAGTTTCAAAGTCACACATACGGAAACGTGCCAAGACTCTTGGAGTCTCTGCCTCTTCTCGTGCTCCTTCTCTCTATCCTCGCAGCATCAGCATCATGATCGTGCCGAAACGCGAATTGATTAacgacgatgacgataaagataacgacgccgttaacgacgacgacgCTGATGATCACCAAACGCCGAAAGGCCGGCGAGGTATTCGTTCACGGTACCTCTCCGTCAAGAACATGATTCACGATGAAAGGGAAGAAATTGCCAGGGCTGACTCTCACAAGTTTAATTTGATCTTTAATGAAATGGAAACCTTACATCAGCTAGTTACAAAGCCAAGAGAACAAGTAGCCGATGCAAAGGCTCTTTTGGACATCACCCAATCTTTGGTAATGTCTGTGAAAAATATTGCCATTGGTGGACTAACTCCTTCAGACTTTGTTACCCACATTCTTAAAAAATTCGGAGGACAAGCTGGACCAAGTAATAGCACTGAAGATTTCAGCAGAAACTCAGTAGCTTGGAAGGATATTGGAGTTGCAGTGTCACGTGTTTTTAGAGCGGGTTGTGGGTGTTATACAATGATTGGCGCCATGGATGCTAAAATAAAACAGAGGAAGGTTTATAATCGTCGCAAGCGTGTGAGACCCACTGAATTGGCCCGGCCTAAAGAGCTTGGTGGTGGTTCGGGGGAAGAGAGAACTGAGACTGATAAACATATGATAACCATGTTTAACATCTTAAGGATTAATAAATTTGTGAAGCTTGAAAATCTGATTTTGAATCGGAACTCATTCGCACAAACGGTGGAGAATTTATTTGCTTTATCCTTTTTAGTCAGAGATGGGCGGGCTGAAATAAAAGTGAACGAGGCTGGATGGCTACTAGTTTCGCCAAGGAATGCTCCTGCTGCTAATTCAGTAGTTTCCAGGGATGTTGCTTTTAGCCACTTTGTATTCAGATTTGACTTCAATGATTGGAAGCTGATGGTTTGCTCTGTTGGTGTTGGTGAGGAGCTGATGCCTCATAGGGATAGCCAATTACAGAGTCAGACTGAAGTATCTGCAGAATCTAGTGAAAAAAAGAAAAAGAAAGAAAAGAAGCCCAGAACAACAAAAGTTCAGTGATTTGGTTCCAAGTAGCATAGATAGTAGTAAACAGAAATTAGTCACCAGGAAGTGATGCATTTGTTGAAGACACTCCCGTGTTGTCGTACTCGTAGTGATCAAAGAGCTTATGTACAGTGATTTTGCATATTGTTAAGAATTTTTGTTTTGCTCATTCTATGCGTAGGAATATACAAGCTCATTATATTTGATTCAGGTCAAATTTGC

>Glyma.03g144100.3 sequence-type=transcript locus=Glyma.03g144100 ID=Glyma.03g144100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCAAACATGATACCCGATGTTTTCCCGGTGTTGCTCACACGACTTTCTTTGTTTCTCATATTTAAATTTTGGTGTAGTTCTCACCGTTTTTTTTTTCTGTCTCGTCATAGTATGTTACTCCTACATGTAAAGGATACAAATATAAATTTTTTGCTTCCAATTTTGATTTTAATGTTTAGTCTGATGTCAGTTACAAAGCCAAGAGAACAAGTAGCCGATGCAAAGGCTCTTTTGGACATCACCCAATCTTTGGTAATGTCTGTGAAAAATATTGCCATTGGTGGACTAACTCCTTCAGACTTTGTTACCCACATTCTTAAAAAATTCGGAGGACAAGCTGGACCAAGTAATAGCACTGAAGATTTCAGCAGAAACTCAGTAGCTTGGAAGGATATTGGAGTTGCAGTGTCACGTGTTTTTAGAGCGGGTTGTGGGTGTTATACAATGATTGGCGCCATGGATGCTAAAATAAAACAGAGGAAGGTTTATAATCGTCGCAAGCGTGTGAGACCCACTGAATTGGCCCGGCCTAAAGAGCTTGGTGGTGGTTCGGGGGAAGAGAGAACTGAGACTGATAAACATATGATAACCATGTTTAACATCTTAAGGATTAATAAATTTGTGAAGCTTGAAAATCTGATTTTGAATCGGAACTCATTCGCACAAACGGTGGAGAATTTATTTGCTTTATCCTTTTTAGTCAGAGATGGGCGGGCTGAAATAAAAGTGAACGAGGCTGGATGGCTACTAGTTTCGCCAAGGAATGCTCCTGCTGCTAATTCAGTAGTTTCCAGGGATGTTGCTTTTAGCCACTTTGTATTCAGATTTGACTTCAATGATTGGAAGCTGATGGTTTGCTCTGTTGGTGTTGGTGAGGAGCTGATGCCTCATAGGGATAGCCAATTACAGAGTCAGACTGAAGTATCTGCAGAATCTAGTGAAAAAAAGAAAAAGAAAGAAAAGAAGCCCAGAACAACAAAAGTTCAGTGATTTGGTTCCAAGTAGCATAGATAGTAGTAAACAGAAATTAGTCACCAGGAAGTGATGCATTTGTTGAAGACACTCCCGTGTTGTCGTACTCGTAGTGATCAAAGAGCTTATGTACAGTGATTTTGCATATTGTTAAGAATTTTTGTTTTGCTCATTCTATGCGTAGGAATATACAAGCTCATTATATTTGATTCAGGTCAAATTTGC

Coding sequences of Glyma.03g144100

Limit To All Plant Sequences

>Glyma.03g144100.1 sequence-type=CDS polypeptide=Glyma.03g144100.1.p locus=Glyma.03g144100 ID=Glyma.03g144100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCGTGCCGAAACGCGAATTGATTAACGACGATGACGATAAAGATAACGACGCCGTTAACGACGACGACGCTGATGATCACCAAACGCCGAAAGGCCGGCGAGGTATTCGTTCACGGTACCTCTCCGTCAAGAACATGATTCACGATGAAAGGGAAGAAATTGCCAGGGCTGACTCTCACAAGTTTAATTTGATCTTTAATGAAATGGAAACCTTACATCAGCTAGTTACAAAGCCAAGAGAACAAGTAGCCGATGCAAAGGCTCTTTTGGACATCACCCAATCTTTGGTAATGTCTGTGAAAAATATTGCCATTGGTGGACTAACTCCTTCAGACTTTGTTACCCACATTCTTAAAAAATTCGGAGGACAAGCTGGACCAAGTAATAGCACTGAAGATTTCAGCAGAAACTCAGTAGCTTGGAAGGATATTGGAGTTGCAGTGTCACGTGTTTTTAGAGCGGGTTGTGGGTGTTATACAATGATTGGCGCCATGGATGCTAAAATAAAACAGAGGAAGGTTTATAATCGTCGCAAGCGTGTGAGACCCACTGAATTGGCCCGGCCTAAAGAGCTTGGTGGTGGTTCGGGGGAAGAGAGAACTGAGACTGATAAACATATGATAACCATGTTTAACATCTTAAGGATTAATAAATTTGTGAAGCTTGAAAATCTGATTTTGAATCGGAACTCATTCGCACAAACGGTGGAGAATTTATTTGCTTTATCCTTTTTAGTCAGAGATGGGCGGGCTGAAATAAAAGTGAACGAGGCTGGATGGCTACTAGTTTCGCCAAGGAATGCTCCTGCTGCTAATTCAGTAGTTTCCAGGGATGTTGCTTTTAGCCACTTTGTATTCAGATTTGACTTCAATGATTGGAAGCTGATGGTTTGCTCTGTTGGTGTTGGTGAGGAGCTGATGCCTCATAGGGATAGCCAATTACAGAGTCAGACTGAAGTATCTGCAGAATCTAGTGAAAAAAAGAAAAAGAAAGAAAAGAAGCCCAGAACAACAAAAGTTCAGTGA

>Glyma.03g144100.2 sequence-type=CDS polypeptide=Glyma.03g144100.2.p locus=Glyma.03g144100 ID=Glyma.03g144100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCGTGCCGAAACGCGAATTGATTAACGACGATGACGATAAAGATAACGACGCCGTTAACGACGACGACGCTGATGATCACCAAACGCCGAAAGGCCGGCGAGGTATTCGTTCACGGTACCTCTCCGTCAAGAACATGATTCACGATGAAAGGGAAGAAATTGCCAGGGCTGACTCTCACAAGTTTAATTTGATCTTTAATGAAATGGAAACCTTACATCAGCTAGTTACAAAGCCAAGAGAACAAGTAGCCGATGCAAAGGCTCTTTTGGACATCACCCAATCTTTGGTAATGTCTGTGAAAAATATTGCCATTGGTGGACTAACTCCTTCAGACTTTGTTACCCACATTCTTAAAAAATTCGGAGGACAAGCTGGACCAAGTAATAGCACTGAAGATTTCAGCAGAAACTCAGTAGCTTGGAAGGATATTGGAGTTGCAGTGTCACGTGTTTTTAGAGCGGGTTGTGGGTGTTATACAATGATTGGCGCCATGGATGCTAAAATAAAACAGAGGAAGGTTTATAATCGTCGCAAGCGTGTGAGACCCACTGAATTGGCCCGGCCTAAAGAGCTTGGTGGTGGTTCGGGGGAAGAGAGAACTGAGACTGATAAACATATGATAACCATGTTTAACATCTTAAGGATTAATAAATTTGTGAAGCTTGAAAATCTGATTTTGAATCGGAACTCATTCGCACAAACGGTGGAGAATTTATTTGCTTTATCCTTTTTAGTCAGAGATGGGCGGGCTGAAATAAAAGTGAACGAGGCTGGATGGCTACTAGTTTCGCCAAGGAATGCTCCTGCTGCTAATTCAGTAGTTTCCAGGGATGTTGCTTTTAGCCACTTTGTATTCAGATTTGACTTCAATGATTGGAAGCTGATGGTTTGCTCTGTTGGTGTTGGTGAGGAGCTGATGCCTCATAGGGATAGCCAATTACAGAGTCAGACTGAAGTATCTGCAGAATCTAGTGAAAAAAAGAAAAAGAAAGAAAAGAAGCCCAGAACAACAAAAGTTCAGTGA

>Glyma.03g144100.3 sequence-type=CDS polypeptide=Glyma.03g144100.3.p locus=Glyma.03g144100 ID=Glyma.03g144100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATACCCGATGTTTTCCCGGTGTTGCTCACACGACTTTCTTTGTTTCTCATATTTAAATTTTGGTGTAGTTCTCACCGTTTTTTTTTTCTGTCTCGTCATAGTATGTTACTCCTACATGTAAAGGATACAAATATAAATTTTTTGCTTCCAATTTTGATTTTAATGTTTAGTCTGATGTCAGTTACAAAGCCAAGAGAACAAGTAGCCGATGCAAAGGCTCTTTTGGACATCACCCAATCTTTGGTAATGTCTGTGAAAAATATTGCCATTGGTGGACTAACTCCTTCAGACTTTGTTACCCACATTCTTAAAAAATTCGGAGGACAAGCTGGACCAAGTAATAGCACTGAAGATTTCAGCAGAAACTCAGTAGCTTGGAAGGATATTGGAGTTGCAGTGTCACGTGTTTTTAGAGCGGGTTGTGGGTGTTATACAATGATTGGCGCCATGGATGCTAAAATAAAACAGAGGAAGGTTTATAATCGTCGCAAGCGTGTGAGACCCACTGAATTGGCCCGGCCTAAAGAGCTTGGTGGTGGTTCGGGGGAAGAGAGAACTGAGACTGATAAACATATGATAACCATGTTTAACATCTTAAGGATTAATAAATTTGTGAAGCTTGAAAATCTGATTTTGAATCGGAACTCATTCGCACAAACGGTGGAGAATTTATTTGCTTTATCCTTTTTAGTCAGAGATGGGCGGGCTGAAATAAAAGTGAACGAGGCTGGATGGCTACTAGTTTCGCCAAGGAATGCTCCTGCTGCTAATTCAGTAGTTTCCAGGGATGTTGCTTTTAGCCACTTTGTATTCAGATTTGACTTCAATGATTGGAAGCTGATGGTTTGCTCTGTTGGTGTTGGTGAGGAGCTGATGCCTCATAGGGATAGCCAATTACAGAGTCAGACTGAAGTATCTGCAGAATCTAGTGAAAAAAAGAAAAAGAAAGAAAAGAAGCCCAGAACAACAAAAGTTCAGTGA

Predicted protein sequences of Glyma.03g144100

Limit To All Plant Sequences

>Glyma.03g144100.1.p sequence-type=predicted peptide transcript=Glyma.03g144100.1 locus=Glyma.03g144100 ID=Glyma.03g144100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIVPKRELINDDDDKDNDAVNDDDADDHQTPKGRRGIRSRYLSVKNMIHDEREEIARADSHKFNLIFNEMETLHQLVTKPREQVADAKALLDITQSLVMSVKNIAIGGLTPSDFVTHILKKFGGQAGPSNSTEDFSRNSVAWKDIGVAVSRVFRAGCGCYTMIGAMDAKIKQRKVYNRRKRVRPTELARPKELGGGSGEERTETDKHMITMFNILRINKFVKLENLILNRNSFAQTVENLFALSFLVRDGRAEIKVNEAGWLLVSPRNAPAANSVVSRDVAFSHFVFRFDFNDWKLMVCSVGVGEELMPHRDSQLQSQTEVSAESSEKKKKKEKKPRTTKVQ*

>Glyma.03g144100.2.p sequence-type=predicted peptide transcript=Glyma.03g144100.2 locus=Glyma.03g144100 ID=Glyma.03g144100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIVPKRELINDDDDKDNDAVNDDDADDHQTPKGRRGIRSRYLSVKNMIHDEREEIARADSHKFNLIFNEMETLHQLVTKPREQVADAKALLDITQSLVMSVKNIAIGGLTPSDFVTHILKKFGGQAGPSNSTEDFSRNSVAWKDIGVAVSRVFRAGCGCYTMIGAMDAKIKQRKVYNRRKRVRPTELARPKELGGGSGEERTETDKHMITMFNILRINKFVKLENLILNRNSFAQTVENLFALSFLVRDGRAEIKVNEAGWLLVSPRNAPAANSVVSRDVAFSHFVFRFDFNDWKLMVCSVGVGEELMPHRDSQLQSQTEVSAESSEKKKKKEKKPRTTKVQ*

>Glyma.03g144100.3.p sequence-type=predicted peptide transcript=Glyma.03g144100.3 locus=Glyma.03g144100 ID=Glyma.03g144100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIPDVFPVLLTRLSLFLIFKFWCSSHRFFFLSRHSMLLLHVKDTNINFLLPILILMFSLMSVTKPREQVADAKALLDITQSLVMSVKNIAIGGLTPSDFVTHILKKFGGQAGPSNSTEDFSRNSVAWKDIGVAVSRVFRAGCGCYTMIGAMDAKIKQRKVYNRRKRVRPTELARPKELGGGSGEERTETDKHMITMFNILRINKFVKLENLILNRNSFAQTVENLFALSFLVRDGRAEIKVNEAGWLLVSPRNAPAANSVVSRDVAFSHFVFRFDFNDWKLMVCSVGVGEELMPHRDSQLQSQTEVSAESSEKKKKKEKKPRTTKVQ*

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