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Report for Sequence Feature Glyma.03g142400

Feature Type:gene_model
Chromosome:Gm03
Start:35810204
stop:35817330
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g142400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06839.3AT bZIP transcription factor family protein JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
PTHR22952Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI N/AIEA
PTHR22952:SF54Panther JGI N/AIEA
PF00170PFAM bZIP transcription factor JGI N/AIEA

Proteins Associated with Glyma.03g142400
LocusGene SymbolProtein Name
BZIP30 bZIP transcription factor 6
bZIP24 Basic leucine zipper transcription factor-like protein gene 24

Expression Patterns of Glyma.03g142400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g142400 not represented in the dataset
Glyma.03g142400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g142400
ParalogEvidenceComments
Glyma.19g145300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g142400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g29825 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g142400
>Glyma.03g142400.1 sequence-type=CDS polypeptide=Glyma.03g142400.1.p locus=Glyma.03g142400 ID=Glyma.03g142400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGCTTCTTCAAAGACCACCAACCCAATAACAACTACTACACAATTGGAACCACTCCCTCCACCTCAACACCGTCATCATCCTCATCATCTTCATCAGTTACAACAACAGCAACACCAACATCATTATCATCAACAAATTCATGACCATCAAATTTCTTTTGGACTGATGCAATCCTCTTCTTCATCTTCCTCTATCCCCGGAAACTACCTCGGAAGCAAGGATTCCGGGGCTTATGACTTGGGTGAATTGGATCAAGCCTTTTTCCTCTACCTTGATGGACAAGCTGACCCTTCTAGTGTTCAAGACCAAAGACAGAACTCATCATCAGGAATGAGGCCTCCGACTCTCAACATTTTCCCCTCTAAGCCTATGCACGTAGAGCCATCATCATCCAAGTCCAAGGCTAACATAGAGCTAGTTTCTCCACAAACAAGTGGATCAAAGAGACCATCAGAGCCGTCGATGGAGTTGGCTAACCCCCGAAACGAAACTGCTTCTGCCCCTCAACCACCCAAACCTGTCAAGCGAGAGGGCAATCGCAAAGGTCCAACGTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGACACTCAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCCTATGTTCAACAACTAGAGTCGAGTAGGATTAGGCTGAATCAGCTGGAACAAGAGCTACAACGTGCTAGAACTCAGGGCATGTTCTTGGGTGGAGGTGCACTCTTGGGTGGAGAGCAAGGACTTCCTGTCACTATGAATACCATTAGCACGGAGGCTGCAATGTTTGACGTAGAATATGCTAGATGGCAAGAGGAGAACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCTGAGAACGAGCTTAGACTTTTTGTTGACAATTGTTTGGCGCATTATGACCAAGTGATGAACCTCAAGAGCTTAGTGGCCAAAACAGATGTGTTCCATCTTGTTTCTGGCATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATTGGTGGATTCAGGCCATCTGAACTCATTAAGATTATTGTGAGTCAAATTGAGCCTCTCACCGAGCAACAAATATTGGGCATATGTGGATTGCAACAATCTACACAAGAAGCAGAAGAGGCTCTCTCCCAAGGACTCGAGGCTCTCAATCAATCTCTCTCGGACACTATAACATCAGATTCTCTTAGTTATCCTCCCAATATGGCTAACTATATGGGACAGATGGCTGTGGCCATGAACAAACTCTCCACTCTTGAAGGTTTCGTGAGACAGGCTGATAATCTGCGGCACCAAACCATTCACCGTCTTCACCAGATTCTAACAACGCGTCAAGCAGCAAGGTGTTTTTTGGCCATAGCTGAGTACTTTCATCGTCTTCGAGCCCTCAGTTCATTGTGGTTGGCACGCCCTCGCCAAGAATAG
Predicted protein sequences of Glyma.03g142400
>Glyma.03g142400.1.p sequence-type=predicted peptide transcript=Glyma.03g142400.1 locus=Glyma.03g142400 ID=Glyma.03g142400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMASSKTTNPITTTTQLEPLPPPQHRHHPHHLHQLQQQQHQHHYHQQIHDHQISFGLMQSSSSSSSIPGNYLGSKDSGAYDLGELDQAFFLYLDGQADPSSVQDQRQNSSSGMRPPTLNIFPSKPMHVEPSSSKSKANIELVSPQTSGSKRPSEPSMELANPRNETASAPQPPKPVKREGNRKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRARTQGMFLGGGALLGGEQGLPVTMNTISTEAAMFDVEYARWQEENHRIVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFRPSELIKIIVSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTITSDSLSYPPNMANYMGQMAVAMNKLSTLEGFVRQADNLRHQTIHRLHQILTTRQAARCFLAIAEYFHRLRALSSLWLARPRQE*






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