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Report for Sequence Feature Glyma.03g137000

Feature Type:gene_model
Chromosome:Gm03
Start:35290305
stop:35296922
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g137000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13630.1AT magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) JGI N/AIEA
GO:0009058GO-bp biosynthetic process EnsemblGenomesN/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0015995GO-bp chlorophyll biosynthetic process EnsemblGenomesN/AIEA
GO:0016851GO-mf magnesium chelatase activity EnsemblGenomesN/AIEA
GO:0016851GO-mf magnesium chelatase activity JGI N/AIEA
PTHR23304Panther SPOT2-RELATED JGI N/AIEA
PTHR23304:SF77Panther JGI N/AIEA
PF02514PFAM CobN/Magnesium Chelatase JGI N/AIEA
PF11965PFAM Domain of unknown function (DUF3479) JGI N/AIEA
CHLOROPHYLL-SYNSoyCyc9 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) Plant Metabolic Network ISS
GN7V-53438SoyCyc9-rxn magnesium chelatase Plant Metabolic Network ISS

Proteins Associated with Glyma.03g137000
LocusGene SymbolProtein Name
chlH magnesium chelatase subunit H
CHLH magnesium chelatase subunit

Expression Patterns of Glyma.03g137000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g137000
ParalogEvidenceComments
Glyma.19g139300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g137000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g29330 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g137000
>Glyma.03g137000.1 sequence-type=CDS polypeptide=Glyma.03g137000.1.p locus=Glyma.03g137000 ID=Glyma.03g137000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCTTTAGTATCTTCACAATTTACACTACCAAGTTCTAAACCTGACCAGCTTCATTCTCTTGCTCAGAAGCATCTTTTTCTCCACTCTTTCCTTCCCAAGAAGGCCAATTACAATGGTAGCAGCTCAAAATCCTCTCTGAGAGTGAAATGTGCTGCCATTGGCAATGGTCTATTCACCCAAACCACCCAAGAAGTTCGTAGAATTGTTCCAGAGAATGACCAGAACTTGCCAACAGTTAAAATTGTGTATGTGGTCCTTGAGGCTCAGTACCAATCATCCCTCACTGCTGCAGTGATAGCTCTCAACAGCAAGAGGAAGCATGCTTCCTATGAGGTTGTTGGTTACTTGGTTGAGGAGCTTCGGGACGCGGCGACGTACAAGACCTTCTGCAAGGACTTGGAGGATGCCAACATCTTCATTGGGTCCTTGATTTTTGTGGAGGAGCTTGCCCTCAAGATAAAGGTTGCAGTGGAGAAAGAAAGGGAAAGGCTTGATGCAGTTTTGGTGTTTCCATCAATGCCTGAAGTGATGAGACTCAACAAGTTGGGTTCCTTCAGCATGTCACAGCTTGGGCAGTCAAAGAGCCCCTTTTTCCAGCTCTTCAAGAGAAAGAAGCCTCAGTCTGCTGGCTTTGCTGACAGCATGTTGAAGCTTGTGAGGACATTGCCAAAGGTTTTAAAGTATTTGCCAAGTGATAAGGCTCAGGATGCAAGGCTCTACATACTGAGTCTGCAGTTTTGGCTTGGAGGGTCTCCTGATAACTTGGAGAATTTCCTGAAAATGGTTTCTGGATCTTATATTCCGGCGCTGAAAGAGACGAAGATCGAGTATTCGGAGCCGGTTTTGTACTTGGATGTGGGGATTTGGCACCCTTTGGCTCCTTGTATGTATGATGATGTCAAGGAGTATTTGAATTGGTATGGAACCAGAAGGGATGCAAATGAGAAGCTGAAGAGTCCGAATGCACCGGTCATTGGTTTGGTTTTGCAGAGGAGTCATATTGTGACTGGTGATGATGGACACTATGTGGCTGTGATCATGGAGCTGGAGGCTAGAGGGGCTAAGGTCATTCCCATTTTTGCCGGCGGACTTGACTTTTCAGGGCCAGTGGAGAAGTTCTTCATTGATCCGATTACAAAGAAACCGTTTGTGAATTCTGTGGTTTCCCTCACTGGCTTTGCTCTTGTTGGAGGCCCTGCAAGGCAGGACCATCCAAGGGCGGTCGAGGCTTTGATGAAACTTGATGTTCCTTACATTGTTGCCCTGCCACTGGTGTTCCAGACAACAGAAGAATGGCTCAACAGTACTCTTGGTCTGCATCCAATTCAGGTTGCTCTTCAAGTTGCTCTGCCAGAGCTAGATGGAGGCATGGAGCCAATTGTTTTCGCTGGTCGAGATCCTAAAACAGGAAAATCTCATGCTCTTCATAAGAGAGTGGAACAGCTCTGCATCAGGGCAATCAGATGGGCTGAATTGAAAAGAAAATCAAAGGAAGAGAAGAAACTAGCAATCACTGTCTTCAGTTTCCCTCCAGACAAAGGAAACGTGGGAACTGCTGCCTATCTCAATGTCTTCGCCTCCATATACTCAGTTATGAAAGAACTAAAAAAAGATGGTTACAATGTTGATGGCCTTCCGGAGACTTCAGAAGCTTTGATTGAAGATGTACTTCATGACAAAGAAGCCCAATTCAGCAGCCCAAATCTGAACATTGCTTACAAAATGAATGTTCGCGAGTACCAAAATTTGACTCCCTATGCCACAGCACTGGAGGAGAATTGGGGAAAACCCCCTGGCAATCTGAATGCAGATGGAGAAAATCTTCTGGTATATGGGAAACAGTATGGTAATGTCTTCATAGGTGTTCAGCCTACATTTGGCTATGAAGGGGATCCAATGAGGCTGCTTTTCTCCAAATCTGCAAGCCCTCATCATGGATTTGCAGCATATTATTCCTTTGTTGAGAAAATCTTCAAAGCTGATGCTGTACTTCATTTTGGGACACATGGTTCCCTTGAATTCATGCCTGGAAAACAGGTGGGGATGAGTGATGTATGTTACCCTGACAGTCTGATTGGGAATATTCCAAATGTATATTACTATGCTGCAAACAACCCTTCTGAGGCCACCATTGCCAAGCGCAGGAGTTATGCAAACACCATTAGCTATCTGACTCCTCCAGCGGAAAATGCTGGGCTATACAAAGGTCTTAAGCAGTTAAGTGAGCTCATCTCCTCATATCAGTCCCTCAAAGACACCGGCCGTGGGGCACAAATTGTGAGTTCAATTATCAGCACAGCTAAACAATGCAATCTTGACAAGGATGTGACTCTGCCAGACGAGGGTGAGGAGATCCCACCTAAAGAGCGCGACCTTGTGGTTGGACAGGTGTATTCCAAGATCATGGAGATCGAGTCTCGTTTGTTACCTTGTGGGCTTCATATTATTGGTGAGCCTCCCTCAGCCTTGGAAGCAGTTGCTACACTGGTCAACATTGCTGCACTTGATCGTCCTGAAGATGGTATTTCTTCTCTTCCATCAATATTAGCTGACACTGTAGGAAGAGATATAGAAGATGTGTATAGAGGAAGTAACAAAGGAATATTGAAGGATGTAGAGCTTCTTAGACAAATAACCGAGGCATCACGTGGAGCAATCACTGCCTTTGTGGAGCGCACTACTAATAATAAGGGTCAAGTTGTTGATGTAGCTGATAAGCTTAGTTCAATCCTTGGATTTGGCATAAATGAGCCATGGATACAGTACTTATCAAACACCAAATTTTACCGAGCTGATAGGGAAAAACTTAGAACCTTGTTTGTGTTCCTGGGAGAATGTTTGAAGTTGATTGTGGCTGATAATGAAGTGGGAAGTTTAAAACAAGCCTTGGAAGGTAAATATGTGGAGCCAGGGCCTGGTGGTGACCCAATAAGAAATCCAAAAGTCTTGCCAACAGGAAAGAATATTCATGCCCTGGACCCTCAATCTATTCCTACAACTGCAGCGATGCAGAGTGCCAAAATAGTGGTAGATAGGTTGATTGAGAGGCAGAAAGCTGAGAATGGGGGAAAATATCCTGAGACAATTGCACTTGTATTGTGGGGAACTGATAATATTAAAACATATGGTGAATCCCTGGCTCAAGTCTTGTGGATGATTGGTGTGGAACCAGTGGCTGATACCTTTGGCAGGGTAAACCGGGTGGAACCTGTAAGTCTTGAAGAGCTTGGAAGGCCTAGGATTGATGTTGTTGTTAATTGCTCAGGAGTGTTTAGAGACCTTTTCATCAATCAGATGAATCTTCTGGATAGAGCAGTGAAGATGGTTGCTGAATTAGATGAACCAGCAGAGCAAAACTATGTAAAAAAGCATGCATCAGAACAAGCTCAAGCCCTTGGAGTTGAAGTTCGAGAGGCAGCAACAAGGATCTTCTCCAATGCTTCTGGCTCCTACTCCTCAAACATAAACTTGGCTGTGGAGAATTCTTCATGGAATGATGAGAAGCAGCTCCAAGACATGTATCTTAGCAGAAAGTCTTTTGCTTTTGATTCTGATGCCCCTGGTGCTGGCATGACTGAGAAAAGAAAAGTCTTCGAGATGGCTCTGAGCACAGCAGATGCCACATTCCAAAATCTTGATTCATCAGAAATTTCCCTCACTGACGTCAGTCATTACTTTGACTCAGACCCGACTAATCTGGTACAAAATCTAAGGAAAGATGGGAAGAAGCCTAGTGCATACATTGCTGATACAACCACAGCCAATGCTCAGGTACGTACACTTTCTGAGACGGTTAGACTTGACGCAAGAACCAAGCTGTTGAATCCAAAGTGGTATGAAGGCATGTTGTCTACTGGATATGAGGGTGTACGCGAGATCGAGAAGAGACTCACCAATACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGATAACTGGGTGTATGAAGAAGCCAACACAACTTTCATTCAAGATGAGCAAATGCTGAACAAGCTCATGAGCACTAATCCAAACTCCTTCAGGAAACTGGTGCAGACATTCTTGGAAGCCAATGGACGTGGTTATTGGGAAACTTCAGAAGATAATATTGAGAAGCTCAGGCAGTTGTATTCAGAAGTGGAAGACAAAATTGAAGGCATTGATCGCTGA
Predicted protein sequences of Glyma.03g137000
>Glyma.03g137000.1.p sequence-type=predicted peptide transcript=Glyma.03g137000.1 locus=Glyma.03g137000 ID=Glyma.03g137000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASLVSSQFTLPSSKPDQLHSLAQKHLFLHSFLPKKANYNGSSSKSSLRVKCAAIGNGLFTQTTQEVRRIVPENDQNLPTVKIVYVVLEAQYQSSLTAAVIALNSKRKHASYEVVGYLVEELRDAATYKTFCKDLEDANIFIGSLIFVEELALKIKVAVEKERERLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKRKKPQSAGFADSMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLENFLKMVSGSYIPALKETKIEYSEPVLYLDVGIWHPLAPCMYDDVKEYLNWYGTRRDANEKLKSPNAPVIGLVLQRSHIVTGDDGHYVAVIMELEARGAKVIPIFAGGLDFSGPVEKFFIDPITKKPFVNSVVSLTGFALVGGPARQDHPRAVEALMKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGMEPIVFAGRDPKTGKSHALHKRVEQLCIRAIRWAELKRKSKEEKKLAITVFSFPPDKGNVGTAAYLNVFASIYSVMKELKKDGYNVDGLPETSEALIEDVLHDKEAQFSSPNLNIAYKMNVREYQNLTPYATALEENWGKPPGNLNADGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGAQIVSSIISTAKQCNLDKDVTLPDEGEEIPPKERDLVVGQVYSKIMEIESRLLPCGLHIIGEPPSALEAVATLVNIAALDRPEDGISSLPSILADTVGRDIEDVYRGSNKGILKDVELLRQITEASRGAITAFVERTTNNKGQVVDVADKLSSILGFGINEPWIQYLSNTKFYRADREKLRTLFVFLGECLKLIVADNEVGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQSIPTTAAMQSAKIVVDRLIERQKAENGGKYPETIALVLWGTDNIKTYGESLAQVLWMIGVEPVADTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFINQMNLLDRAVKMVAELDEPAEQNYVKKHASEQAQALGVEVREAATRIFSNASGSYSSNINLAVENSSWNDEKQLQDMYLSRKSFAFDSDAPGAGMTEKRKVFEMALSTADATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSTGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEQMLNKLMSTNPNSFRKLVQTFLEANGRGYWETSEDNIEKLRQLYSEVEDKIEGIDR*






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