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Report for Sequence Feature Glyma.03g133000

Feature Type:gene_model
Chromosome:Gm03
Start:34790211
stop:34802509
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g133000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10140.1AT RECA homolog 3 JGI N/AIEA
GO:0000730GO-bp DNA recombinase assembly EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0006312GO-bp mitotic recombination EnsemblGenomesN/AIEA
GO:0009432GO-bp SOS response JGI N/AIEA
GO:0010212GO-bp response to ionizing radiation EnsemblGenomesN/AIEA
GO:0042148GO-bp strand invasion EnsemblGenomesN/AIEA
GO:0000150GO-mf recombinase activity EnsemblGenomesN/AIEA
GO:0000400GO-mf four-way junction DNA binding EnsemblGenomesN/AIEA
GO:0003690GO-mf double-stranded DNA binding EnsemblGenomesN/AIEA
GO:0003697GO-mf single-stranded DNA binding EnsemblGenomesN/AIEA
GO:0003697GO-mf single-stranded DNA binding JGI N/AIEA
GO:0004520GO-mf endodeoxyribonuclease activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008094GO-mf DNA-dependent ATPase activity EnsemblGenomesN/AIEA
PTHR22942Panther RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER JGI N/AIEA
PTHR22942:SF1Panther MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG JGI N/AIEA
PF00154PFAM recA bacterial DNA recombination protein JGI N/AIEA

Expression Patterns of Glyma.03g133000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g133000 not represented in the dataset
Glyma.03g133000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g133000
ParalogEvidenceComments
Glyma.19g134900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.


Coding sequences of Glyma.03g133000
>Glyma.03g133000.1 sequence-type=CDS polypeptide=Glyma.03g133000.1.p locus=Glyma.03g133000 ID=Glyma.03g133000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCTTTTTCCTCGTCTCCATATCTTCGCTAGGCCTTTACTTTCCTCATCTCTCTCTGCCCCTTCTGCCAGTGTGCTAATGCTCCTGAATCCTGATGGGACAGATTTGTGGATTTGGTTTGATAGTTCAATTGAGCTGGGTAATGTTCCTCTAATGTTGTTAATTCAAAGCATTAATGGAGGTAGACAAGTAATGACCAGGATTGGCATGAATGCCTGCTCTCTTTCTTCTGCAGCTGAAGCTTCAGATTTTGAATGTGATGTGACCCATGATGATGTCAAAGCAGCAGACAAAGATAATGCACTTTGCTTGGCTCTCTCACAGCTTAAGATTTTTGGTGTACGCCGTGCTCGTGTGATATCTATAGGCTCCTTGAAGCTTCATCTAGCTCTGGGAATTAGAGGATTACCAAAGGGTAGGATTGTGGAAATTTATGGACGAGATGCAGCTGGTAAGACTACAATTGCACTTCGAATTATTAAAGAAGCTCAAAAGCTTGGAGAATTTATTTTGCACAGTTATGTTTCCTTTAAGTGGCAAATGTGCCGGTTAAAGGCTCTATGTATACAGAAACATCCTTATGAGCTCGTAAATTGTCATCAATTATTACTTTTAATACTGAAAACCTTCTTATATATATCACATCCTGATTGTGCTGAAAATTTGTTAAGCATGGTTGTTACATTAACAAAAAGTGGTGCTGTAGATGTGATTGTGATTGATAGTGTGGAGGGTGTTATGATCTGTGCTCAAGTGGTAAAAAATAAACTAGCACCCGCAGCAACGAAAAGGGCTGAACAGGGTATCAAGTTTGGAAGAGGGTTTTGCCATGAGTCAGATGTCTTAGATTTGGCTTGTGAACATGGAATCATTGTGAAACATGAGGGAAGCTACTTTATTGAAGGGAGCAGTTTGGATAGTAGAGAAGCAGCTGAACTATTTTTGGCTCAAAATGATGCAGTTTGTGACAAGTTGGTTAGGGATATGACAAGACTTTATTTTTAA
Predicted protein sequences of Glyma.03g133000
>Glyma.03g133000.1.p sequence-type=predicted peptide transcript=Glyma.03g133000.1 locus=Glyma.03g133000 ID=Glyma.03g133000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLFPRLHIFARPLLSSSLSAPSASVLMLLNPDGTDLWIWFDSSIELGNVPLMLLIQSINGGRQVMTRIGMNACSLSSAAEASDFECDVTHDDVKAADKDNALCLALSQLKIFGVRRARVISIGSLKLHLALGIRGLPKGRIVEIYGRDAAGKTTIALRIIKEAQKLGEFILHSYVSFKWQMCRLKALCIQKHPYELVNCHQLLLLILKTFLYISHPDCAENLLSMVVTLTKSGAVDVIVIDSVEGVMICAQVVKNKLAPAATKRAEQGIKFGRGFCHESDVLDLACEHGIIVKHEGSYFIEGSSLDSREAAELFLAQNDAVCDKLVRDMTRLYF*






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