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Report for Sequence Feature Glyma.03g130900

Feature Type:gene_model
Chromosome:Gm03
Start:34612113
stop:34616010
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g130900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G04040.1AT Patatin-like phospholipase family protein JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006629GO-bp lipid metabolic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0016042GO-bp lipid catabolic process EnsemblGenomesN/AIEA
GO:0004806GO-mf triglyceride lipase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG2214 KOG Predicted esterase of the alpha-beta hydrolase superfamily JGI N/AIEA
PTHR11711Panther ADP RIBOSYLATION FACTOR-RELATED JGI N/AIEA
PTHR11711:SF1Panther JGI N/AIEA
PF01734PFAM Patatin-like phospholipase JGI N/AIEA
PF11815PFAM Domain of unknown function (DUF3336) JGI N/AIEA
LIPAS-PWYSoyCyc9 triacylglycerol degradation Plant Metabolic Network ISS
GN7V-46455SoyCyc9-rxn triacylglycerol lipase Plant Metabolic Network ISS

Proteins Associated with Glyma.03g130900
LocusGene SymbolProtein Name
SDP1-4 triacylglycerol lipase SDP1

Expression Patterns of Glyma.03g130900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g130900
ParalogEvidenceComments
Glyma.19g132900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g130900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g28660 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g130900
>Glyma.03g130900.1 sequence-type=CDS polypeptide=Glyma.03g130900.1.p locus=Glyma.03g130900 ID=Glyma.03g130900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGATCATATTAGTAATGAGGCCAGTGTTGACCGTTTTCCAATTGGTCCTTCTGGCATTCTTGGTAGGACAATTGCTTTCAGGGTTCTTTTTTGCAAGTCTATCTCACATTTTAGGCACCACATATTTATTGTGTTGTTAGATCTCTTCTATAGGTTTAGGGGGGGTTTGGCATCCTTTATATCATGGTTGCATCCCAGGAACCCTCAAGGGATATTGGCAATGATGACAATTGTTGCTTTCTTGTTGAAACGATACACAAATGTGAAATCAAGGGCTGAAATGGCATATAGGAGGAAGTTTTGGAGAAACATGATGAGAAGTGCTTTGACCTATGAGGAGTGGGCTCATGCAGCTAAGATGCTTGATAAAGAGACAACAAAGATGAATGAATCAGACCTTTATGATGTGGAATTGGTGAGGAACAAGCTTCAAGAGCTCCGCCACCGTCGACAAGAGGGATCTCTCGGAGATATAATGTTTTTTATGCGTGCCGATCTTATTAGAAATTTAGGTAATATGTGTAACCCTGAACTACACAAGGGTAGGCTTCAGGTGCCTAAATTAATCAAGGAGTACATTGATGAAGTAACGACTCAATTGAGAATGGTCTGTGATTCTGATTCAGAGGAGCTATCATTGGAAGAAAAGCTTGCTTTCATGCATGAAACTAGGCATGCATTTGGGAGGACTGCTTTGCTGTTAAGTGGGGGTGCCTCTCTTGGAGCTTCTCATGTGGGTGTAGTTAAAACACTGGTAGAACATAAACTCATGCCTAGGATAATTGCTGGTTCAAGTGTGGGATCCATTATGTGTGCTGTTGTTGCCACTAGGACTTGGCCTGAGCTCCAGAGCTTTTTTGAGGATTCATGGCACTCATTGCAATTTTTTGATCAAATGGGTGGGATTTTTGCAGTTGTTAAGAGAGTCACAACATTGGGTGCTGTTCATGAGATCAGACAGTTGCAAATGATGTTGAGGCATCTAACAAGCAACCTTACATTTCAAGAAGCTTATGACATGACAGGCAGAATTCTTGGGATTACTGTTTGTTCCCCAAGGAAGCATGAACCGCCTAGATGTCTTAACTACTTGACTTCACCCCATGTGGTTATATGGAGTGCAGTAACCGCTTCTTGTGCCTTTCCTGGCCTTTTTGAGGCTCAAGAATTGATGGCAAAGGATAGAAGTGGAGAGATTGTTCCTTACCACCCTCCTTTTAACTTAGGCCCTGAAGAGGGCTCCACACCAGTGCGCCGTTGGAGGGATGGTAGCTTGGAGATTGATTTACCTATGATGCAGTTGAAAGAACTATTCAATGTCAATCATTTTATAGTTAGTCAGGCCAACCCTCATATTGCACCACTATTGAGATTGAAAGAATTTGTGCGGACTTATGGGGGCAACTTTGCTGCCAAGCTTGCTCATCTTGTGGAGATGGAGGTGAAACATAGGTGTCATCAAATACTGGAACTTGGTTTTCCATTAGGTGGACTTGCTAAATTGTTTGCTCAAGACTGGGAAGGTGATGTGACTGTTGTTATTCCCGCAACTCTTGCTCAGTACACCAAAATTATACAGAACCCTTCTTATGGAGAGCTTCAAAAGGCAGCCAACCAAGGGAGAAGATGTACCTGGGAGAAACTTTCAGCCATAAAAGCAAATTGTGGCATTGAGCTTGCTCTTGATGAGTGTGTTGTGATTCTCAATCATATGAGAAGACTAAAGAGAATTGCTGAGAGAGCTGCTTCTGCCTCTCATGGTTTGTCCAGCACTGTCAGGTTCAGTGCTTCAAAAAGAATTCCTTCGTGGAATTGCATTGCACGAGAGAATTCGACCGGCTCCCTTGAGGACCTTACTGATGTTGCCTCCTCATTGCATCAAGGCATCGGCAGTTCCAGCAGAGCCAATGGCAAAACTTGGAAGACCCACCGTGGCATACATGATGGAAGTGACAGTGACTCTGAAAGTGTTGATTTGCATTCTTGGACAAGAACTGGCGGGCCTTTGATGAGAACTACTTCAGCAAATATGTTCGTTGATTTTCTCCAAAACTTAGAGGTTGATACGGATCCTAATAAAGGCTTAGTGAGTCACACTATCCATAATGATTTTCAGTATCATAGCCCCAGGCTCACAACACTAGATAGGAACTCTGATAGCACAGAATCTGAGCCAAGGGAAACTGGCAACAGGGTTGTCAATGTGTCCAGCATACTTGTGACCGAAGGTGATCTTCTGCAGCCTGAAAGGATCCATAATGGGATTGTGTTTAATGTTGTCAAGAAAGAAGACTTGTCACCCTTAAGTAGTAGCAGTCATGGTTTTGAAAATTACAACATTGAAGTTGCTGAATGTGTCCAAGATGAGTGTCCAGGGAAGGAGATAGATGCTGCTAGCTCTGCATCTGAACACGGAGATGATGAAGAATCCATGCCAGCCAGGTCCTTAACTGACATGCCAGATTACAATTCCATTGATCATCATTCGGGCACAGATTCGGGTATGGATCAAAGCATTGTTGACAGTTAG
Predicted protein sequences of Glyma.03g130900
>Glyma.03g130900.1.p sequence-type=predicted peptide transcript=Glyma.03g130900.1 locus=Glyma.03g130900 ID=Glyma.03g130900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMDHISNEASVDRFPIGPSGILGRTIAFRVLFCKSISHFRHHIFIVLLDLFYRFRGGLASFISWLHPRNPQGILAMMTIVAFLLKRYTNVKSRAEMAYRRKFWRNMMRSALTYEEWAHAAKMLDKETTKMNESDLYDVELVRNKLQELRHRRQEGSLGDIMFFMRADLIRNLGNMCNPELHKGRLQVPKLIKEYIDEVTTQLRMVCDSDSEELSLEEKLAFMHETRHAFGRTALLLSGGASLGASHVGVVKTLVEHKLMPRIIAGSSVGSIMCAVVATRTWPELQSFFEDSWHSLQFFDQMGGIFAVVKRVTTLGAVHEIRQLQMMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFNLGPEEGSTPVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHIAPLLRLKEFVRTYGGNFAAKLAHLVEMEVKHRCHQILELGFPLGGLAKLFAQDWEGDVTVVIPATLAQYTKIIQNPSYGELQKAANQGRRCTWEKLSAIKANCGIELALDECVVILNHMRRLKRIAERAASASHGLSSTVRFSASKRIPSWNCIARENSTGSLEDLTDVASSLHQGIGSSSRANGKTWKTHRGIHDGSDSDSESVDLHSWTRTGGPLMRTTSANMFVDFLQNLEVDTDPNKGLVSHTIHNDFQYHSPRLTTLDRNSDSTESEPRETGNRVVNVSSILVTEGDLLQPERIHNGIVFNVVKKEDLSPLSSSSHGFENYNIEVAECVQDECPGKEIDAASSASEHGDDEESMPARSLTDMPDYNSIDHHSGTDSGMDQSIVDS*






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