Report for Sequence Feature Glyma.03g130600
Feature Type: gene_model
Chromosome: Gm03
Start: 34536054
stop: 34538175
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.03g130600
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G56970.1 AT
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
JGI N/A IEA
GO:0006357 GO-bp
regulation of transcription by RNA polymerase II
EnsemblGenomes N/A IEA
GO:0090575 GO-cc
RNA polymerase II transcription factor complex
EnsemblGenomes N/A IEA
GO:0000977 GO-mf
RNA polymerase II regulatory region sequence-specific DNA binding
EnsemblGenomes N/A IEA
GO:0003677 GO-mf
DNA binding
EnsemblGenomes N/A IEA
GO:0003700 GO-mf
DNA binding transcription factor activity
EnsemblGenomes N/A IEA
GO:0046983 GO-mf
protein dimerization activity
EnsemblGenomes N/A IEA
GO:0046983 GO-mf
protein dimerization activity
JGI N/A IEA
PTHR13935 Panther
ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED
JGI N/A IEA
PTHR13935:SF2 Panther
JGI N/A IEA
PF00010 PFAM
Helix-loop-helix DNA-binding domain
JGI N/A IEA
Proteins Associated with Glyma.03g130600
Locus Gene Symbol Protein Name
BHLH300 bHLH transcription factor bHLH300
Expression Patterns of Glyma.03g130600
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.03g130600
Paralog Evidence Comments
Glyma.19g132500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.03g130600 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma03g28630 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.03g130600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.03g130600.1 sequence-type=CDS polypeptide=Glyma.03g130600.1.p locus=Glyma.03g130600 ID=Glyma.03g130600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGCTTTGTTTTCCCCTCCGGTGTTCTCAACCAAGGGATGGTTCTTAGAAGAAGAGCCATTAAGCTATGATGTGTCTTCAGATTACTCATTTCCCTATCAATTTTTTGCACCACAGACACAGATTGAACTTGAAATAGAAAGGTCCTCTGCACCATCCCCTGAAGACCCTGCCATGGTCAAAAAGCTTAGCCACAACGCTAGTGAACGTGATCGCCGCAAGAAGGTTAATGACTTGGTTTCTTCACTTCGTTCACTTCTTCCTGGGCCAGATCAAACGAAAAAAATGAGCATTCCAGCTACAGTTTCGCGAGTTTTAAAATACATACCTGAGTTACAACATCAAGTGCAAGCACTAACTAAGAAAAAAGAGGAGCTTCTGTGCAGAATTTCAAAAAATCTCAAAGGAGATTCGGTGAACAAAGAATCTCAAAGGAGAATTTCCCATCACAATTCTGATTTTGCTGTTTCAACTAGTAGGCTCAACGATTGTGAAGCTGTTGTTCACATTTCCTCTTATGAGGCTCACAAGGCTCCACTATCCGACATCTTGCAATGTTTAGAAAATAATGGCCTTTATTTGCTAAATGCTTCTTCCTCTGAAACTTTTGGAGGAAGGGTCTTCTACAACTTGCATTTCCAGGTGGAAAAAACTCATAGATTAGAGTCCGAAATTCTAACTGAGAAGCTTTTGTCAATATATGAGAAGCAAAGGATTTTCTAA
Predicted protein sequences of Glyma.03g130600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.03g130600.1.p sequence-type=predicted peptide transcript=Glyma.03g130600.1 locus=Glyma.03g130600 ID=Glyma.03g130600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVALFSPPVFSTKGWFLEEEPLSYDVSSDYSFPYQFFAPQTQIELEIERSSAPSPEDPAMVKKLSHNASERDRRKKVNDLVSSLRSLLPGPDQTKKMSIPATVSRVLKYIPELQHQVQALTKKKEELLCRISKNLKGDSVNKESQRRISHHNSDFAVSTSRLNDCEAVVHISSYEAHKAPLSDILQCLENNGLYLLNASSSETFGGRVFYNLHFQVEKTHRLESEILTEKLLSIYEKQRIF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
