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Report for Sequence Feature Glyma.03g124400

Feature Type:gene_model
Chromosome:Gm03
Start:33743790
stop:33746784
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g124400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G12250.1AT beta-6 tubulin JGI N/AIEA
GO:0006184GO-bp GTP catabolic process JGI N/AIEA
GO:0007010GO-bp cytoskeleton organization EnsemblGenomesN/AIEA
GO:0007017GO-bp microtubule-based process EnsemblGenomesN/AIEA
GO:0051258GO-bp protein polymerization JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005856GO-cc cytoskeleton EnsemblGenomesN/AIEA
GO:0005874GO-cc microtubule EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity JGI N/AIEA
GO:0005200GO-mf structural constituent of cytoskeleton EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
KOG1375 KOG Beta tubulin JGI N/AIEA
PTHR11588Panther TUBULIN JGI N/AIEA
PF00091PFAM Tubulin/FtsZ family, GTPase domain JGI N/AIEA
PF03953PFAM Tubulin C-terminal domain JGI N/AIEA
GN7V-65426SoyCyc9-rxn purine-nucleoside phosphorylase Plant Metabolic Network ISS

Proteins Associated with Glyma.03g124400
LocusGene SymbolProtein Name
TUBB3 beta-tubulin

Expression Patterns of Glyma.03g124400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g124400
ParalogEvidenceComments
Glyma.19g127700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g124400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g27970 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g124400
>Glyma.03g124400.1 sequence-type=CDS polypeptide=Glyma.03g124400.1.p locus=Glyma.03g124400 ID=Glyma.03g124400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGGAGATCCTTCACGTTCAGGGAGGGCAATGCGGGAACCAGATCGGTTCGAAGTTCTGGGAAGTGGTGTGCGACGAGCACGGCATAGATCCGACGGGGAAGTACGTCGGAAACTCAGATCTACAACTCGAGCGCGTGAACGTGTACTACAACGAAGCTTCCTGCGGGCGGTTTGTCCCACGCGCAGTGCTGATGGACCTGGAGCCCGGAACCATGGACAGCGTGCGGACTGGGCCGTACGGGCAGATATTCCGGCCCGACAACTTCGTGTTCGGGCAGTCCGGCGCGGGCAACAACTGGGCCAAGGGGCACTACACGGAGGGCGCCGAGCTCATCGACTCCGTCCTTGACGTCGTGCGCAAGGAGGCCGAGAACTGCGACTGCCTCCAGGGGTTCCAGGTCTGCCACTCGCTCGGCGGAGGAACCGGCTCCGGGATGGGGACGCTTTTGATTTCCAAGATCAGAGAGGAGTACCCTGACAGAATGATGCTCACCTTCTCCGTTTTTCCTTCCCCCAAGGTCTCTGATACTGTGGTTGAGCCTTATAACGCTACTCTTTCTGTTCATCAGTTGGTGGAGAATGCTGATGAGTGTATGGTGCTTGATAATGAGGCGCTCTACGATATCTGCTTCAGGACTCTCAAGTTGACCACTCCTAGCTTTGGTGACTTGAACCACTTGATCTCTGCGACCATGAGTGGTGTTACATGCTGTCTTCGATTCCCTGGTCAACTCAACTCTGATCTGAGGAAATTGGCCGTGAATCTCATTCCCTTCCCTCGTCTGCACTTCTTCATGGTTGGATTTGCGCCTCTCACCTCTCGCGGCTCTCAGCAATACCGCGCATTGACAGTGCCAGAGCTGACACAGCAAATGTGGGATGCCAAGAACATGATGTGTGCTGCAGATCCAAGGCACGGGCGTTACCTCACGGCATCAGCCATGTTCCGTGGCAAGATGAGCACCAAGGAGGTGGACGAGCAGATGATAAACGTGCAGAACAAGAACTCTTCATATTTTGTCGAGTGGATTCCCAACAATGTCAAGTCGAGCGTGTGTGACATTGCTCCTAGAGGGCTCTCCATGGCGTCCACATTCATTGGAAACTCGACCTCGATTCAGGAGATGTTCAGGAGGGTGAGTGAGCAGTTCACGGCCATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACCGGGGAAGGCATGGACGAGATGGAGTTCACAGAGGCAGAGAGCAACATGAACGACCTTGTTTCAGAGTACCAGCAGTACCAGGATGCCACTGCCGAGGATGATGGGGAGTATGAGGACGAGGAGGACGATGATGTTGAAGCAGACCACATGTGA
Predicted protein sequences of Glyma.03g124400
>Glyma.03g124400.1.p sequence-type=predicted peptide transcript=Glyma.03g124400.1 locus=Glyma.03g124400 ID=Glyma.03g124400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGKYVGNSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEDDGEYEDEEDDDVEADHM*






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