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Report for Sequence Feature Glyma.03g123100

Feature Type:gene_model
Chromosome:Gm03
Start:33595167
stop:33598927
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g123100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G56650.1AT Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein JGI N/AIEA
GO:0015979GO-bp photosynthesis EnsemblGenomesN/AIEA
GO:0015979GO-bp photosynthesis JGI N/AIEA
GO:0009523GO-cc photosystem II EnsemblGenomesN/AIEA
GO:0009523GO-cc photosystem II JGI N/AIEA
GO:0009654GO-cc photosystem II oxygen evolving complex EnsemblGenomesN/AIEA
GO:0009654GO-cc photosystem II oxygen evolving complex JGI N/AIEA
GO:0019898GO-cc extrinsic component of membrane EnsemblGenomesN/AIEA
GO:0019898GO-cc extrinsic component of membrane JGI N/AIEA
GO:0005509GO-mf calcium ion binding EnsemblGenomesN/AIEA
GO:0005509GO-mf calcium ion binding JGI N/AIEA
PF01789PFAM PsbP JGI N/AIEA
PHOTOALL-PWYSoyCyc9 oxygenic photosynthesis Plant Metabolic Network ISS
PWY-101SoyCyc9 photosynthesis light reactions Plant Metabolic Network ISS
GN7V-67737SoyCyc9-rxn photosystem II Plant Metabolic Network ISS

Expression Patterns of Glyma.03g123100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g123100
ParalogEvidenceComments
Glyma.19g126700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g123100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g27850 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g123100
>Glyma.03g123100.2 sequence-type=transcript locus=Glyma.03g123100 ID=Glyma.03g123100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGATCCTGGTGTATCCACAATGGATAAGAAACAGTGACTCAGATTCTAACATCAACTTTAAACCTTGTCCTTTCATCATACACACATTTCACTAACATCAATCCCCTCAATCTGAAATGACAACCTTTGCATTCACTTCCTTGCTCCCACTTACAGTCTCATCACCATCTTCATCTTCCAAATTCTCAGCTTTTCATGCTATCAGAGCCTCATTAGATTCTGAGTATGTTGCCTCCCGACACACCCTTAGAAGGGAATTCTTGAAGGGTGTTGCTTTGATGCCTCTGCCACTTGTTGTGATGAGAGAACCACCCCCTTCACATGCTAGAGAAGTTGAGGTTGGCTCCTTCCTTCCACCCTCTCCCTCTGACCCTTCTTTCGTTCTCTTCAAGGCCACTCCCAAGGACACTCCAGCCCTTCGAGCAGGAAATGTGCAGCCATACAAGTTTATCCTCCCCCCGACTTGGAAACAGGCTCGTGTAGCAAATATATTATCTGGAAATTACTGCCAGCCTAAATGTGCAGAGCCCTGGGTGGAGGTTAAGTTTGAAGATGAAAAACAAGGAAAAGTTCAGGTTGTTGCTTCGCCTTTGATACGCCTTACCAACAAACCGAATGCATCAATTGAGGACATCGGGAGCCCAGAAAAACTGATTGCTTCTCTTGGGCCATTTGTCACTGGAAACACTTTGGATCCAGATGAGCTCCTTGAGACTTCTGTTGAAAAGATTGGCGATCAGACATACTACAAATACGTGCTCGAAACACCATATGCTCTCACAGGAACACACAATCTTGCAAAAGCAACAGCAAAGGGAAACACTGTTGTTTTGTTTGTGGTTAGTGCCAATGACAAGCAGTGGCAAACTTCTGAGGAGACTCTAAAGGCCGTGCTTAATTCCTTTGAAGTTTAGTTTTCTCTCAAAGTACCAACTCTTTTGACTTATCC
Coding sequences of Glyma.03g123100
>Glyma.03g123100.1 sequence-type=CDS polypeptide=Glyma.03g123100.1.p locus=Glyma.03g123100 ID=Glyma.03g123100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAACCTTTGCATTCACTTCCTTGCTCCCACTTACAGTCTCATCACCATCTTCATCTTCCAAATTCTCAGCTTTTCATGCTATCAGAGCCTCATTAGATTCTGAGTATGTTGCCTCCCGACACACCCTTAGAAGGGAATTCTTGAAGGGTGTTGCTTTGATGCCTCTGCCACTTGTTGTGATGAGAGAACCACCCCCTTCACATGCTAGAGAAGTTGAGGTTGGCTCCTTCCTTCCACCCTCTCCCTCTGACCCTTCTTTCGTTCTCTTCAAGGCCACTCCCAAGGACACTCCAGCCCTTCGAGCAGGAAATGTGCAGCCATACAAGTTTATCCTCCCCCCGACTTGGAAACAGGCTCGTGTAGCAAATATATTATCTGGAAATTACTGCCAGCCTAAATGTGCAGAGCCCTGGGTGGAGGTTAAGTTTGAAGATGAAAAACAAGGAAAAGTTCAGGTTGTTGCTTCGCCTTTGATACGCCTTACCAACAAACCGAATGCATCAATTGAGGACATCGGGAGCCCAGAAAAACTGATTGCTTCTCTTGGGCCATTTGTCACTGGAAACACTTTGGATCCAGATGAGCTCCTTGAGACTTCTGTTGAAAAGATTGGCGATCAGACATACTACAAATACGTGCTCGAAACACCATATGCTCTCACAGGAACACACAATCTTGCAAAAGCAACAGCAAAGGGAAACACTGTTGTTTTGTTTGTGGTTAGTGCCAATGACAAGCAGTGGCAAACTTCTGAGGAGACTCTAAAGGCCGTGCTTAATTCCTTTGAAGTTTAG

>Glyma.03g123100.2 sequence-type=CDS polypeptide=Glyma.03g123100.2.p locus=Glyma.03g123100 ID=Glyma.03g123100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAACCTTTGCATTCACTTCCTTGCTCCCACTTACAGTCTCATCACCATCTTCATCTTCCAAATTCTCAGCTTTTCATGCTATCAGAGCCTCATTAGATTCTGAGTATGTTGCCTCCCGACACACCCTTAGAAGGGAATTCTTGAAGGGTGTTGCTTTGATGCCTCTGCCACTTGTTGTGATGAGAGAACCACCCCCTTCACATGCTAGAGAAGTTGAGGTTGGCTCCTTCCTTCCACCCTCTCCCTCTGACCCTTCTTTCGTTCTCTTCAAGGCCACTCCCAAGGACACTCCAGCCCTTCGAGCAGGAAATGTGCAGCCATACAAGTTTATCCTCCCCCCGACTTGGAAACAGGCTCGTGTAGCAAATATATTATCTGGAAATTACTGCCAGCCTAAATGTGCAGAGCCCTGGGTGGAGGTTAAGTTTGAAGATGAAAAACAAGGAAAAGTTCAGGTTGTTGCTTCGCCTTTGATACGCCTTACCAACAAACCGAATGCATCAATTGAGGACATCGGGAGCCCAGAAAAACTGATTGCTTCTCTTGGGCCATTTGTCACTGGAAACACTTTGGATCCAGATGAGCTCCTTGAGACTTCTGTTGAAAAGATTGGCGATCAGACATACTACAAATACGTGCTCGAAACACCATATGCTCTCACAGGAACACACAATCTTGCAAAAGCAACAGCAAAGGGAAACACTGTTGTTTTGTTTGTGGTTAGTGCCAATGACAAGCAGTGGCAAACTTCTGAGGAGACTCTAAAGGCCGTGCTTAATTCCTTTGAAGTTTAG
Predicted protein sequences of Glyma.03g123100
>Glyma.03g123100.1.p sequence-type=predicted peptide transcript=Glyma.03g123100.1 locus=Glyma.03g123100 ID=Glyma.03g123100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTFAFTSLLPLTVSSPSSSSKFSAFHAIRASLDSEYVASRHTLRREFLKGVALMPLPLVVMREPPPSHAREVEVGSFLPPSPSDPSFVLFKATPKDTPALRAGNVQPYKFILPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEDIGSPEKLIASLGPFVTGNTLDPDELLETSVEKIGDQTYYKYVLETPYALTGTHNLAKATAKGNTVVLFVVSANDKQWQTSEETLKAVLNSFEV*

>Glyma.03g123100.2.p sequence-type=predicted peptide transcript=Glyma.03g123100.2 locus=Glyma.03g123100 ID=Glyma.03g123100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTFAFTSLLPLTVSSPSSSSKFSAFHAIRASLDSEYVASRHTLRREFLKGVALMPLPLVVMREPPPSHAREVEVGSFLPPSPSDPSFVLFKATPKDTPALRAGNVQPYKFILPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEDIGSPEKLIASLGPFVTGNTLDPDELLETSVEKIGDQTYYKYVLETPYALTGTHNLAKATAKGNTVVLFVVSANDKQWQTSEETLKAVLNSFEV*






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