SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.03g120600

Feature Type:gene_model
Chromosome:Gm03
Start:33212882
stop:33216232
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g120600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19750.1AT Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
KOG1944 KOG Peroxisomal membrane protein MPV17 and related proteins JGI N/AIEA
PTHR11266Panther PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 (MPV17) JGI N/AIEA
PTHR11266:SF4Panther JGI N/AIEA
PF04117PFAM Mpv17 / PMP22 family JGI N/AIEA

Expression Patterns of Glyma.03g120600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g120600 not represented in the dataset
Glyma.03g120600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g120600
ParalogEvidenceComments
Glyma.19g125200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g120600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g27541 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g120600
>Glyma.03g120600.1 sequence-type=CDS polypeptide=Glyma.03g120600.1.p locus=Glyma.03g120600 ID=Glyma.03g120600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGTATGGAGGAACATTATGCCCACACGCGCACAAATTCCTTCTCTTGCCCATTGCCTTCAACCATTGCCGTCAAAACACCACTCGCCTTCAACAATTTCAAACTCTCACTCCGCTCCACTCTCAGTCCCTTCCTTTCAACTTCAACAACTCCGCCACGCCCTTCAAACCCACCCTCCCCCTCCTCTCCGCCCTCCCCAACGACGGCTTCGGCGGAAGCGGCCCACGTGGCGGCGGTGGCGGTGGCGGTGGCGGAGGCTCTGACGGTCCGAATTCCGGCGGCGGAGGCGATGGAGGAGACAAGTACTTGGCTCTTCTTGGAAAACACCCTGTTGCCGTGAAAGCTCTAACATCTGCAATTTTGAATCTAATTGGAGATTTGTTATGCGAGCTTGTGATAGACAAAGTGCCATCACTGGATTTCAAGAGGACATTTGTCTTTACTTTTCTTGGTTTTGCTTTAGTGGGTCCAACATTGCATTTCTGGTATTTGTATATGAGTAAATTGGTTACACTTCCTGGAGCATCAGGTGCCCTTTTGCGGCTTGTACTTGATCAGTTCTTATTTTCACCCATATTCAGCGGAGTTTTCTTATCTACATTGGTGACACTGGAGGGAAGCCCATCACAAGTTGTACCCAAGCTTAAACAGGTCCTTGCTGCTAATGTTATTGCTTTGATGTGGAATATTATTCTCTCATTTATGGCACATAAAGAGGTTCTTACAAAATAG
Predicted protein sequences of Glyma.03g120600
>Glyma.03g120600.1.p sequence-type=predicted peptide transcript=Glyma.03g120600.1 locus=Glyma.03g120600 ID=Glyma.03g120600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSYGGTLCPHAHKFLLLPIAFNHCRQNTTRLQQFQTLTPLHSQSLPFNFNNSATPFKPTLPLLSALPNDGFGGSGPRGGGGGGGGGGSDGPNSGGGGDGGDKYLALLGKHPVAVKALTSAILNLIGDLLCELVIDKVPSLDFKRTFVFTFLGFALVGPTLHFWYLYMSKLVTLPGASGALLRLVLDQFLFSPIFSGVFLSTLVTLEGSPSQVVPKLKQVLAANVIALMWNIILSFMAHKEVLTK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo