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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G11680.1 | AT | CYTOCHROME P450 51G1 | JGI | N/A | IEA |
| GO:0016126 | GO-bp | sterol biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0070988 | GO-bp | demethylation | EnsemblGenomes | N/A | IEA |
| GO:0005783 | GO-cc | endoplasmic reticulum | EnsemblGenomes | N/A | IEA |
| GO:0005886 | GO-cc | plasma membrane | EnsemblGenomes | N/A | IEA |
| GO:0004497 | GO-mf | monooxygenase activity | EnsemblGenomes | N/A | IEA |
| GO:0005506 | GO-mf | iron ion binding | EnsemblGenomes | N/A | IEA |
| GO:0005506 | GO-mf | iron ion binding | JGI | N/A | IEA |
| GO:0008398 | GO-mf | sterol 14-demethylase activity | EnsemblGenomes | N/A | IEA |
| GO:0009055 | GO-mf | electron carrier activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016705 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | EnsemblGenomes | N/A | IEA |
| GO:0016705 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | JGI | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | EnsemblGenomes | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG0158 | KOG | Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies | JGI | N/A | IEA |
| KOG0684 | KOG | Cytochrome P450 | JGI | N/A | IEA |
| PTHR24286 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR24286:SF13 | Panther | JGI | N/A | IEA | |
| PF00067 | PFAM | Cytochrome P450 | JGI | N/A | IEA |
| PWY-2541 | SoyCyc9 | plant sterol biosynthesis | Plant Metabolic Network | ISS | |
| PWY-6663 | SoyCyc9 | plant sterol biosynthesis II | Plant Metabolic Network | ISS | |
| GN7V-51374 | SoyCyc9-rxn | sterol 14-demethylase | Plant Metabolic Network | ISS |
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Glyma.03g115300 not represented in the dataset |
Glyma.03g115300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g110900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma03g26820 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g115300.2 sequence-type=transcript locus=Glyma.03g115300 ID=Glyma.03g115300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 AGTGGACACACACAACTTCATAAAGTGTAACAAACAAAATCACACCACAGATCTGCACAACATGATTCATGACACATTAGATCTGTGTCATTAGTCCTTGGTTTATCAAACCACCACAATTACACCGATCAAAAACACAAAACACTACTCATCACATCTTATTCACATCACATCCACTTTCATTACTACATCATTTTCCACTTCACAATCTTcacaccacacacacacacacacacaacacaacacaATCATGGAAATTGATGGTAGGTTTCTGAACACTGGCCTCCTCCTTGTGGCCACAATCCTTGTAGCCAAACTCATCTCAGCTTTCATAGTGCCCAAGTCCAGAAAGAGGGTACCCCCAATTGTGAAGGGGTGGCCCTTAATTGGAGGGCTAATCCGTTTCCTTAAAGGTCCAATCTTTATGCTCCGTGAGGAGTACCCTAAGCTTGGGAGTGTCTTCACCCTCAAGCTCTTCCACAAGAACATCACCTTCCTCGTTGGCCCTGAGGTCTCTGCATACTTCTTCAAGGCCTCAGAGACTGATCTCAGCCAGCAAGAGGTGTATCAGTTCAATGTGCCAAGTTTTGGACCTGGTGTGGTCTTTGATGTTGATTACTCTGTGAGGCAGGAACAGTTCAGGTTCTTCACTGAGGCTCTTAGGGTCAACAAGCTCAAGGGCTATGTCAATCAGATGGTTGCAGAAGCTGAGGACTATTTCTCAAAATGGGGACCAAGTGGTGAGGTTGATTTGAAGTATGAGCTTGAGCATCTGATCATCTTGACAGCCAGTAGATGTCTCTTGGGGCGTGAAGTTCGTGACAAGCTCTTTGATGATGTCTCTGCATTGTTCCACGACCTTGACAATGGGATGCTTCCAATCAGTGTTCTCTTCCCATACCTGCCAATCCCAGCTCACAAGCGCCGTGACCAGGCACGCAAGAAGCTTGCTGAAATCTTCGCAAGCATCATAACATCTCGCAAGAGTGCCAGCAAATCAGAAGAAGACATGCTGCAGTGCTTCATTGACTCAAAATACAAAGATGGTCGCTCAACAACAGAAGCTGAAGTGACCGGACTCCTCATTGCTGCACTTTTTGCCGGTCAACACACAAGTTCAATTACCTCCACTTGGACTGGAGCATATCTGCTGTCTGACAACCAGTGCCTTTCAGCTGTGCAGGAGGAGCAGAAGATGTTAATAGAAAGCATGGGGACAGAGTTGATCATGATGTTTTGGCTGAAATGGATGTGCTGTATAGGTGCATCAAAGAAGCCTTGAGACTCCATCCTCCTCTAATTATGCTGATGAGAAGCTCACACACTGATTTTAGTGTCACGACACGAGAGGGTAAAGAGTATGACATTCCCAAGGGTCATATAATTGCCACATCACCTGCTTTTGCAAACAGGCTAGGTCATGTTTTCAAGGACCCTGATAGGTATGATCCTGATCGATTTGCTGTGGGGAGGGAAGAGGACAAGGTGGCAGGTGCATTCTCATACATTTCATTTGGAGGAGGCAGACATGGATGCCTTGGGGAGCCTTTTGCATATCTGCAGATAAAAGCTATATGGACTCATCTGCTTAGGAATTTTGAACTGGAGTTGGTGTCACCTTTCCCCGAGATTGATTGGAATGCCATGGTTGTGGGAGTGAAGGGGAAAGTGATGGTCCGATATAAGCGGAAGGAGCTTTCGGTTAATCAATAGGACTGCATGATTCGGTTTCTGGCATGATTTTATTTTAAGCAGTTATTGTTAGTCTTTTCTGGTTCAGCTTCTATCCAAGTTCATTGTTTATTTAACAATGGATATCTAGAatcttgattttgattttttattttgtaattctggtaagtgatttaaacttattttggttttgTGTATTAGATGCTACTGTGATGCAATTAGTTACTCGGGTTGGTTAGTGTAAAATGCTGCATGGGATATTTGAACAAACTGGTTCCATTTAAAAGCTGGGGAATCTTTCTCCCTCTAAACTAATTTACTTATATATTCTTATTTCTTAGAGGATATATCAATTCATAAAAAAAATTAGAGGACTCT
>Glyma.03g115300.1 sequence-type=CDS polypeptide=Glyma.03g115300.1.p locus=Glyma.03g115300 ID=Glyma.03g115300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAAATTGATGGTAGGTTTCTGAACACTGGCCTCCTCCTTGTGGCCACAATCCTTGTAGCCAAACTCATCTCAGCTTTCATAGTGCCCAAGTCCAGAAAGAGGGTACCCCCAATTGTGAAGGGGTGGCCCTTAATTGGAGGGCTAATCCGTTTCCTTAAAGGTCCAATCTTTATGCTCCGTGAGGAGTACCCTAAGCTTGGGAGTGTCTTCACCCTCAAGCTCTTCCACAAGAACATCACCTTCCTCGTTGGCCCTGAGGTCTCTGCATACTTCTTCAAGGCCTCAGAGACTGATCTCAGCCAGCAAGAGGTGTATCAGTTCAATGTGCCAAGTTTTGGACCTGGTGTGGTCTTTGATGTTGATTACTCTGTGAGGCAGGAACAGTTCAGGTTCTTCACTGAGGCTCTTAGGGTCAACAAGCTCAAGGGCTATGTCAATCAGATGGTTGCAGAAGCTGAGGACTATTTCTCAAAATGGGGACCAAGTGGTGAGGTTGATTTGAAGTATGAGCTTGAGCATCTGATCATCTTGACAGCCAGTAGATGTCTCTTGGGGCGTGAAGTTCGTGACAAGCTCTTTGATGATGTCTCTGCATTGTTCCACGACCTTGACAATGGGATGCTTCCAATCAGTGTTCTCTTCCCATACCTGCCAATCCCAGCTCACAAGCGCCGTGACCAGGCACGCAAGAAGCTTGCTGAAATCTTCGCAAGCATCATAACATCTCGCAAGAGTGCCAGCAAATCAGAAGAAGACATGCTGCAGTGCTTCATTGACTCAAAATACAAAGATGGTCGCTCAACAACAGAAGCTGAAGTGACCGGACTCCTCATTGCTGCACTTTTTGCCGGTCAACACACAAGTTCAATTACCTCCACTTGGACTGGAGCATATCTGCTGTCTGACAACCAGTGCCTTTCAGCTGTGCAGGAGGAGCAGAAGATGTTAATAGAAAGCATGGGGACAGAGTTGATCATGATGTTTTGGCTGAAATGGATGTGCATCAAAGAAGCCTTGAGACTCCATCCTCCTCTAATTATGCTGATGAGAAGCTCACACACTGATTTTAGTGTCACGACACGAGAGGGTAAAGAGTATGACATTCCCAAGGGTCATATAATTGCCACATCACCTGCTTTTGCAAACAGGCTAGGTCATGTTTTCAAGGACCCTGATAGGTATGATCCTGATCGATTTGCTGTGGGGAGGGAAGAGGACAAGGTGGCAGGTGCATTCTCATACATTTCATTTGGAGGAGGCAGACATGGATGCCTTGGGGAGCCTTTTGCATATCTGCAGATAAAAGCTATATGGACTCATCTGCTTAGGAATTTTGAACTGGAGTTGGTGTCACCTTTCCCCGAGATTGATTGGAATGCCATGGTTGTGGGAGTGAAGGGGAAAGTGATGGTCCGATATAAGCGGAAGGAGCTTTCGGTTAATCAATAG >Glyma.03g115300.2 sequence-type=CDS polypeptide=Glyma.03g115300.2.p locus=Glyma.03g115300 ID=Glyma.03g115300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAAATTGATGGTAGGTTTCTGAACACTGGCCTCCTCCTTGTGGCCACAATCCTTGTAGCCAAACTCATCTCAGCTTTCATAGTGCCCAAGTCCAGAAAGAGGGTACCCCCAATTGTGAAGGGGTGGCCCTTAATTGGAGGGCTAATCCGTTTCCTTAAAGGTCCAATCTTTATGCTCCGTGAGGAGTACCCTAAGCTTGGGAGTGTCTTCACCCTCAAGCTCTTCCACAAGAACATCACCTTCCTCGTTGGCCCTGAGGTCTCTGCATACTTCTTCAAGGCCTCAGAGACTGATCTCAGCCAGCAAGAGGTGTATCAGTTCAATGTGCCAAGTTTTGGACCTGGTGTGGTCTTTGATGTTGATTACTCTGTGAGGCAGGAACAGTTCAGGTTCTTCACTGAGGCTCTTAGGGTCAACAAGCTCAAGGGCTATGTCAATCAGATGGTTGCAGAAGCTGAGGACTATTTCTCAAAATGGGGACCAAGTGGTGAGGTTGATTTGAAGTATGAGCTTGAGCATCTGATCATCTTGACAGCCAGTAGATGTCTCTTGGGGCGTGAAGTTCGTGACAAGCTCTTTGATGATGTCTCTGCATTGTTCCACGACCTTGACAATGGGATGCTTCCAATCAGTGTTCTCTTCCCATACCTGCCAATCCCAGCTCACAAGCGCCGTGACCAGGCACGCAAGAAGCTTGCTGAAATCTTCGCAAGCATCATAACATCTCGCAAGAGTGCCAGCAAATCAGAAGAAGACATGCTGCAGTGCTTCATTGACTCAAAATACAAAGATGGTCGCTCAACAACAGAAGCTGAAGTGACCGGACTCCTCATTGCTGCACTTTTTGCCGGTCAACACACAAGTTCAATTACCTCCACTTGGACTGGAGCATATCTGCTGTCTGACAACCAGTGCCTTTCAGCTGTGCAGGAGGAGCAGAAGATGTTAATAGAAAGCATGGGGACAGAGTTGATCATGATGTTTTGGCTGAAATGGATGTGCTGTATAGGTGCATCAAAGAAGCCTTGA
>Glyma.03g115300.1.p sequence-type=predicted peptide transcript=Glyma.03g115300.1 locus=Glyma.03g115300 ID=Glyma.03g115300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEIDGRFLNTGLLLVATILVAKLISAFIVPKSRKRVPPIVKGWPLIGGLIRFLKGPIFMLREEYPKLGSVFTLKLFHKNITFLVGPEVSAYFFKASETDLSQQEVYQFNVPSFGPGVVFDVDYSVRQEQFRFFTEALRVNKLKGYVNQMVAEAEDYFSKWGPSGEVDLKYELEHLIILTASRCLLGREVRDKLFDDVSALFHDLDNGMLPISVLFPYLPIPAHKRRDQARKKLAEIFASIITSRKSASKSEEDMLQCFIDSKYKDGRSTTEAEVTGLLIAALFAGQHTSSITSTWTGAYLLSDNQCLSAVQEEQKMLIESMGTELIMMFWLKWMCIKEALRLHPPLIMLMRSSHTDFSVTTREGKEYDIPKGHIIATSPAFANRLGHVFKDPDRYDPDRFAVGREEDKVAGAFSYISFGGGRHGCLGEPFAYLQIKAIWTHLLRNFELELVSPFPEIDWNAMVVGVKGKVMVRYKRKELSVNQ* >Glyma.03g115300.2.p sequence-type=predicted peptide transcript=Glyma.03g115300.2 locus=Glyma.03g115300 ID=Glyma.03g115300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEIDGRFLNTGLLLVATILVAKLISAFIVPKSRKRVPPIVKGWPLIGGLIRFLKGPIFMLREEYPKLGSVFTLKLFHKNITFLVGPEVSAYFFKASETDLSQQEVYQFNVPSFGPGVVFDVDYSVRQEQFRFFTEALRVNKLKGYVNQMVAEAEDYFSKWGPSGEVDLKYELEHLIILTASRCLLGREVRDKLFDDVSALFHDLDNGMLPISVLFPYLPIPAHKRRDQARKKLAEIFASIITSRKSASKSEEDMLQCFIDSKYKDGRSTTEAEVTGLLIAALFAGQHTSSITSTWTGAYLLSDNQCLSAVQEEQKMLIESMGTELIMMFWLKWMCCIGASKKP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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