Glyma.03g106900

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Report for Sequence Feature Glyma.03g106900

Feature Type:	gene_model
Chromosome:	Gm03
Start:	30627416
stop:	30630485
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.03g106900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17080.1	AT	Histone H3 K4-specific methyltransferase SET7/9 family protein	JGI	N/A	IEA
PTHR23084	Panther	PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED	JGI	N/A	IEA
PTHR23084:SF27	Panther		JGI	N/A	IEA
PF02493	PFAM	MORN repeat	JGI	N/A	IEA
PWY-6351	SoyCyc9	D-myo-inositol (1,4,5)-trisphosphate biosynthesis	Plant Metabolic Network		ISS
PWY-6352	SoyCyc9	3-phosphoinositide biosynthesis	Plant Metabolic Network		ISS
GN7V-67453	SoyCyc9-rxn	phosphatidylinositol 4 phosphate 5 kinase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.03g106900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g106900 not represented in the dataset	Glyma.03g106900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.03g106900

Paralog	Evidence	Comments
Glyma.07g118500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Transcripts of Glyma.03g106900

Limit To All Plant Sequences

>Glyma.03g106900.2 sequence-type=transcript locus=Glyma.03g106900 ID=Glyma.03g106900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAGAGGCAGCAAGAAAGGAAATGCCGCGTTCTTTGTGGAAGTATACTACTATTATATGAAAAGCCACATTCATTTGTGGTGTCTGATTACTAATTTAATACAAAACATCAGTCTGAAAACCTTTCCTTCTTATTGTACTACATTTTAAGTTTTGAAATGGTAAATGTCTAGTGAATAGCAAGTATAAGTTTATAAGTTTGTAGGGAGAGAGGCAAGCATACTTCTTACCCTGATCATGATTTAAACACACCCGCCATAGCAATCATTTCGAACATGTTTGGATCAGTAAAACCCAAAGGGAATGGAAGGGGTAAAGATTGTAGAATTATCAATGGCAGTATGAAATAGGATTGATGGATATCACATAAAGGGACCCTTTCCATCAGAGTAAAAGGAAAAAGGAGGTGATGGAAGTATTTTATGATATTATTGTATTTGCTTTTGAGGTGCTCTCTTTATTTATAGTACTGGTTGATGAGAATGAGTTCATTTTCATTATCTGGGTGAACAAATTTTTATGTCCTTCTATGGAAGAAAGACCAATACAAGAGGAGAGTAGAAAACCATTTTGAGGGAATACATTATTTACTTGTTATTTTATATTTCTTTTGTGATTCATTTGAATAAAAGATCAAATAGTTATCTATAAAAACCCCTAATACATTATTTATGTTTCATAAATTTCAAGTTGGTGAATCTTGACACAAATTAAGGGTTTGTGGATTTTTGTTTATTATGAATACATGAGACAACAAATATAATTACTAAAATGCAGTAAAAACTGAAAGATTAAAAGTGTAAACTTGCATATGACCCCTATTTGTATGTATTCATGTTCTTAGGACTTATCTTCATTATTGCTAATTTCAGTTTACAAGGGAAAGAGTATCTGCTCCCAAGGATAGACTCTGTTTTGAAGAAATGGCGATACATATGCTGGCGAATACTTTGCGGATAAGATGCATGGATTTGGGGTATACAGTTTTGCTAATGGCCATCGTTATGAAGGATCCTGGCATGAAGGCAAAAGGCAAGGTCTTGGAATGTATACATTTAGAAATGGAGAAACCCAGTCTGGTCACTGGCAAAATGGAGTCCTTGACATTCCAAGCACACAGAGTACCACCTATCCTGTTTCCCCTGTTGGGGTCAATCATTCCAGAGTACTTAATGCAGTCCAGGAAGCAAGAAGAGCAGCTGAGAAAGCCTATGATGTGGCCAAGGTAGATGAGAGGGTTAATAGAGCAGTAGCTGCCGCTAACAGAGCAGCCAATGCAGCTAGAGTAGCTGCTGTCAAGGCCGTGCAAAACCAAATGCTTCATAATGTTAACAGCACGAGCATCCCAATTCCCATTGTGTGAGGCTGTCAGCTGCAAACTTTTGATAGTAGAGATGCACGAGATTGTCAGAAGAGGTCGGTAGTTTAAACTGCTTTGTTTACACCGTCATCATCACTGCTGGCTGAATGAAATCAAGCAGATTTATTATCCATCTGCCACGAGTCTTGTATAGAGGGAGGAAGGGTGATGGCTTCCACATGGTAAAATACTACATATACATACTATATTTTTTCCCTTTGCCTACATTTTGTAAATTTACTTAGATGTAAATGCTGGTGTGCGGGTGAAACCTCAACCCAGCTACTGTTGTAAGATCGCTTGGTAAAATAAGGAGAGAAACAAACATCTAGCCTAAAATATTCTATTTTTTCCCACTTGCTATTTTTGCTTTATCTGACTTTGGAATGAGATATGTTTCATGTCACGTGTTAACCAGAGTTTTCTATTGGTTAGATAA

>Glyma.03g106900.3 sequence-type=transcript locus=Glyma.03g106900 ID=Glyma.03g106900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTTAAACACACCCGCCATAGCAATCATTTCGAACATGTTTGGATCAGTAAAACCCAAAGGGAATGGAAGGGGTAAAGATTGTAGAATTATCAATGGCAGTATGAAATAGGATTGATGGATATCACATAAAGGGACCCTTTCCATCAGAGTAAAAGGAAAAAGGAGAAATGGCGATACATATGCTGGCGAATACTTTGCGGATAAGATGCATGGATTTGGGGTATACAGTTTTGCTAATGGCCATCGTTATGAAGGATCCTGGCATGAAGGCAAAAGGCAAGGTCTTGGAATGTATACATTTAGAAATGGAGAAACCCAGTCTGGTCACTGGCAAAATGGAGTCCTTGACATTCCAAGCACACAGAGTACCACCTATCCTGTTTCCCCTGTTGGGGTCAATCATTCCAGAGTACTTAATGCAGTCCAGGAAGCAAGAAGAGCAGCTGAGAAAGCCTATGATGTGGCCAAGGTAGATGAGAGGGTTAATAGAGCAGTAGCTGCCGCTAACAGAGCAGCCAATGCAGCTAGAGTAGCTGCTGTCAAGGCCGTGCAAAACCAAATGCTTCATAATGTTAACAGCACGAGCATCCCAATTCCCATTGTGTGAGGCTGTCAGCTGCAAACTTTTGATAGTAGAGATGCACGAGATTGTCAGAAGAGGTCGGTAGTTTAAACTGCTTTGTTTACACCGTCATCATCACTGCTGGCTGAATGAAATCAAGCAGATTTATTATCCATCTGCCACGAGTCTTGTATAGAGGGAGGAAGGGTGATGGCTTCCACATGGTAAAATACTACATATACATACTATATTTTTTCCCTTTGCCTACATTTTGTAAATTTACTTAGATGTAAATGCTGGTGTGCGGGTGAAACCTCAACCCAGCTACTGTTGTAAGATCGCTTGGTAAAATAAGGAGAGAAACAAACATCTAGCCTAAAATATTCTATTTTTTCCCACTTGCTATTTTTGCTTTATCTGACTTTGGAATGAGATATGTTTCATGTCACGTGTTAACCAGAGTTTTCTATTGGTTAGATAA

Coding sequences of Glyma.03g106900

Limit To All Plant Sequences

>Glyma.03g106900.1 sequence-type=CDS polypeptide=Glyma.03g106900.1.p locus=Glyma.03g106900 ID=Glyma.03g106900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCATGGATTTGGGGTATACAGTTTTGCTAATGGCCATCGTTATGAAGGATCCTGGCATGAAGGCAAAAGGCAAGGTCTTGGAATGTATACATTTAGAAATGGAGAAACCCAGTCTGGTCACTGGCAAAATGGAGTCCTTGACATTCCAAGCACACAGAGTACCACCTATCCTGTTTCCCCTGTTGGGGTCAATCATTCCAGAGTACTTAATGCAGTCCAGGAAGCAAGAAGAGCAGCTGAGAAAGCCTATGATGTGGCCAAGGTAGATGAGAGGGTTAATAGAGCAGTAGCTGCCGCTAACAGAGCAGCCAATGCAGCTAGAGTAGCTGCTGTCAAGGCCGTGCAAAACCAAATGCTTCATAATGTTAACAGCACGAGCATCCCAATTCCCATTGTGTGA

>Glyma.03g106900.2 sequence-type=CDS polypeptide=Glyma.03g106900.2.p locus=Glyma.03g106900 ID=Glyma.03g106900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCATGGATTTGGGGTATACAGTTTTGCTAATGGCCATCGTTATGAAGGATCCTGGCATGAAGGCAAAAGGCAAGGTCTTGGAATGTATACATTTAGAAATGGAGAAACCCAGTCTGGTCACTGGCAAAATGGAGTCCTTGACATTCCAAGCACACAGAGTACCACCTATCCTGTTTCCCCTGTTGGGGTCAATCATTCCAGAGTACTTAATGCAGTCCAGGAAGCAAGAAGAGCAGCTGAGAAAGCCTATGATGTGGCCAAGGTAGATGAGAGGGTTAATAGAGCAGTAGCTGCCGCTAACAGAGCAGCCAATGCAGCTAGAGTAGCTGCTGTCAAGGCCGTGCAAAACCAAATGCTTCATAATGTTAACAGCACGAGCATCCCAATTCCCATTGTGTGA

>Glyma.03g106900.3 sequence-type=CDS polypeptide=Glyma.03g106900.3.p locus=Glyma.03g106900 ID=Glyma.03g106900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCATGGATTTGGGGTATACAGTTTTGCTAATGGCCATCGTTATGAAGGATCCTGGCATGAAGGCAAAAGGCAAGGTCTTGGAATGTATACATTTAGAAATGGAGAAACCCAGTCTGGTCACTGGCAAAATGGAGTCCTTGACATTCCAAGCACACAGAGTACCACCTATCCTGTTTCCCCTGTTGGGGTCAATCATTCCAGAGTACTTAATGCAGTCCAGGAAGCAAGAAGAGCAGCTGAGAAAGCCTATGATGTGGCCAAGGTAGATGAGAGGGTTAATAGAGCAGTAGCTGCCGCTAACAGAGCAGCCAATGCAGCTAGAGTAGCTGCTGTCAAGGCCGTGCAAAACCAAATGCTTCATAATGTTAACAGCACGAGCATCCCAATTCCCATTGTGTGA

Predicted protein sequences of Glyma.03g106900

Limit To All Plant Sequences

>Glyma.03g106900.1.p sequence-type=predicted peptide transcript=Glyma.03g106900.1 locus=Glyma.03g106900 ID=Glyma.03g106900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHGFGVYSFANGHRYEGSWHEGKRQGLGMYTFRNGETQSGHWQNGVLDIPSTQSTTYPVSPVGVNHSRVLNAVQEARRAAEKAYDVAKVDERVNRAVAAANRAANAARVAAVKAVQNQMLHNVNSTSIPIPIV*

>Glyma.03g106900.2.p sequence-type=predicted peptide transcript=Glyma.03g106900.2 locus=Glyma.03g106900 ID=Glyma.03g106900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHGFGVYSFANGHRYEGSWHEGKRQGLGMYTFRNGETQSGHWQNGVLDIPSTQSTTYPVSPVGVNHSRVLNAVQEARRAAEKAYDVAKVDERVNRAVAAANRAANAARVAAVKAVQNQMLHNVNSTSIPIPIV*

>Glyma.03g106900.3.p sequence-type=predicted peptide transcript=Glyma.03g106900.3 locus=Glyma.03g106900 ID=Glyma.03g106900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHGFGVYSFANGHRYEGSWHEGKRQGLGMYTFRNGETQSGHWQNGVLDIPSTQSTTYPVSPVGVNHSRVLNAVQEARRAAEKAYDVAKVDERVNRAVAAANRAANAARVAAVKAVQNQMLHNVNSTSIPIPIV*

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