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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G02205.2 | AT | Fatty acid hydroxylase superfamily | JGI | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006633 | GO-bp | fatty acid biosynthetic process | JGI | N/A | IEA |
| GO:0008610 | GO-bp | lipid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005789 | GO-cc | endoplasmic reticulum membrane | EnsemblGenomes | N/A | IEA |
| GO:0005506 | GO-mf | iron ion binding | EnsemblGenomes | N/A | IEA |
| GO:0005506 | GO-mf | iron ion binding | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| PTHR11863 | Panther | STEROL DESATURASE | JGI | N/A | IEA |
| PTHR11863:SF1 | Panther | JGI | N/A | IEA | |
| PF04116 | PFAM | Fatty acid hydroxylase superfamily | JGI | N/A | IEA |
| PF12076 | PFAM | WAX2 C-terminal domain | JGI | N/A | IEA |
| PWY-282 | SoyCyc9 | cuticular wax biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-59553 | SoyCyc9-rxn | octadecanal decarbonylase | Plant Metabolic Network | ISS |
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Glyma.03g101200 not represented in the dataset |
Glyma.03g101200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma03g24320 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g101200.1 sequence-type=CDS polypeptide=Glyma.03g101200.1.p locus=Glyma.03g101200 ID=Glyma.03g101200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCAAGGCCTGGAATCCTAACGGATTGGCCATGGAAACCTCTTGGAAGCTTTAAGTATTTGTTACTAGCACCTTGGGTAGTTCACAGCTCCTATTCTGTGTTGGTGAAGGATAAGAGTGAAAGGGATATAAGCACCTTTCTCATATTTCCATTTCTTCTATGGCGTATGCTTCATAACCAGATATGGATCACTCTCTCTCGTTACCGAACCGCCAAAGGCAATGCTAGAATTGTCGACAAGGGAATTGAGTTTGATCAAGTTGATAGAGAAAGAGATTGGGATGACCAAATATTGTTCAATGGATTATTATACTACTTGGCAAGCTACACATTATCTGGGGCATCCCGTATTCCATTATGGAGAACAGATGGAGTTGTTATGGCAATATTGCTTCATGCAGGACCAGTGGAGTTTCTCTATTATTGGTTACACAGAGCACTTCATCATCATTTTCTCTACTCTCGTTACCACTCTCATCACCATTCTTCAATAGTAACAGAACCTATAACTTCTGTTATTCATCCATTCGCTGAACACATATTATATTTTCTTCTCTTTGCAATACCCAAGTTAACCCTCGTCTTCACAAAAACAGCTTCTGTGGGGGCCATGCTTGGATATGTCACTTACATTGATTTCATGAACAACATGGGTCATTGTAACTTTGAGGTGGTTCCAAAGTGGCTCTTTGACATCTTTCCTCCTCTCAAATATCTCATGTACACCTCATCGTTCCATTCTTTGCACCATACTCAGTTTAGAACAAACTACTCCTTGTTTATGCCTCTTTATGACTACATCTATGGCACCACAGACAAAGCTTCCGATAAATTACACGAGTCAGCATTAAAACAAGAGGAAGAAATCCCTAATGTTGTACACCTAACACATCTCACGACCCCTGAATCCATATATCATCTCAGGCTTGGATTTGCTTACTTGGCTTCTAAGCCTTACACGTCAAAATGGTACCTTTGTTTGATGTGGCCAGTAACAGCTTGGTCCATGATCCTCACATGGGTTTATGGCCGTACATTTATTGTGGAGGGGAATCGTTTTGACAAACTGAAGTTGCAACTTGGGCAATACCCAAGTACATACTTCATGCAATCACAAAAAGTGGCTATCAACACAATGATAGAGGAAGCAATACTCGATGCTGACAGAAAGGGCATAAAAGTTTTGAGCTTAGGCCTAAGGAATCAAGGAGAGGACCTTAACATCTATGGAGGACTATATGTTAGTAGGCATCCAAAGCTAAAAGTTAGGGTTGTAGATGGAAGCAGTCTTGTAGTTGCTGTTGTTCTTAATAGCATTCCCAAGGGAACAACTCAAGTTTTACTTAGGGGCAAACTCACCAAGATTGCTTATGCTCTTGCCTACACATTGTGTCAACAAGGTGTTCAGGTTGCTGCATTGTATGAGGATGATTATGTGAGGCTCAAAAAGTCGTTCAATAGCTCTGAAACCAATTTGGCCTTTACCAAAAGCAGCACACAGACGACTTGGTTAGTAGGAGATGGATTAACTGAAGAGGAACAACTGAAGGCACCCAAAGGAACATTATTTATTCCATACACACAATTTCCACCAAGAAAATATCGTAAGGATTGCTTCTACCATTGCACCCCTGCAATGTTAGCTCCTTGTAGTGTTGAAAATATCCATTCTTGTGAGGATTGGTTGCCAAGGAGGATAATGAGTGCATGGCGCATAGCTGGGATAGTGCACTCTCTAGAAGGATGGACTGAACATGAGTGTGGCCACACAATGCATAACATAGACAATGTTTGGCATTCAACTCTTCAACATGGATTCCAACCTCTTCCGGTGCCAATTAATGAGTAA
>Glyma.03g101200.1.p sequence-type=predicted peptide transcript=Glyma.03g101200.1 locus=Glyma.03g101200 ID=Glyma.03g101200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASRPGILTDWPWKPLGSFKYLLLAPWVVHSSYSVLVKDKSERDISTFLIFPFLLWRMLHNQIWITLSRYRTAKGNARIVDKGIEFDQVDRERDWDDQILFNGLLYYLASYTLSGASRIPLWRTDGVVMAILLHAGPVEFLYYWLHRALHHHFLYSRYHSHHHSSIVTEPITSVIHPFAEHILYFLLFAIPKLTLVFTKTASVGAMLGYVTYIDFMNNMGHCNFEVVPKWLFDIFPPLKYLMYTSSFHSLHHTQFRTNYSLFMPLYDYIYGTTDKASDKLHESALKQEEEIPNVVHLTHLTTPESIYHLRLGFAYLASKPYTSKWYLCLMWPVTAWSMILTWVYGRTFIVEGNRFDKLKLQLGQYPSTYFMQSQKVAINTMIEEAILDADRKGIKVLSLGLRNQGEDLNIYGGLYVSRHPKLKVRVVDGSSLVVAVVLNSIPKGTTQVLLRGKLTKIAYALAYTLCQQGVQVAALYEDDYVRLKKSFNSSETNLAFTKSSTQTTWLVGDGLTEEEQLKAPKGTLFIPYTQFPPRKYRKDCFYHCTPAMLAPCSVENIHSCEDWLPRRIMSAWRIAGIVHSLEGWTEHECGHTMHNIDNVWHSTLQHGFQPLPVPINE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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