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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G58220.1 | AT | transthyretin-like protein | JGI | N/A | IEA |
| GO:0006144 | GO-bp | purine nucleobase metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0033971 | GO-mf | hydroxyisourate hydrolase activity | EnsemblGenomes | N/A | IEA |
| KOG3006 | KOG | Transthyretin and related proteins | JGI | N/A | IEA |
| PTHR10395 | Panther | URICASE AND TRANSTHYRETIN-RELATED | JGI | N/A | IEA |
| PTHR10395:SF7 | Panther | 5-HYDROXYISOURATE HYDROLASE R09H10.3-RELATED | JGI | N/A | IEA |
| PF00576 | PFAM | HIUase/Transthyretin family | JGI | N/A | IEA |
| PF09349 | PFAM | OHCU decarboxylase | JGI | N/A | IEA |
| P165-PWY | SoyCyc9 | superpathway of purines degradation in plants | Plant Metabolic Network | ISS | |
| PWY-5691 | SoyCyc9 | urate conversion to allantoin I | Plant Metabolic Network | ISS | |
| PWY-7394 | SoyCyc9 | urate conversion to allantoin II | Plant Metabolic Network | ISS | |
| URSIN-PWY | SoyCyc9 | ureide biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-52127 | SoyCyc9-rxn | hydroxyisourate hydrolase | Plant Metabolic Network | ISS |
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Glyma.03g093200 not represented in the dataset |
Glyma.03g093200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.16g080700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma03g22930 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g093200.2 sequence-type=transcript locus=Glyma.03g093200 ID=Glyma.03g093200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ACTTCCCCTTTCAGCTGGCCAAAAAGAACTTCTCACGTGGCATTTTGTTCGTGTCCGAAGAACAAGACTAAGGTGCTGACACATCCTCTTCTCTTCTTTTTTTTCCCCAAAAATCTTACACAGATCCTCAAACCATAAAAACACACTCCAATTCCAATTGAAATGTTCAAAACACAAGCGAAGTGAAAAGAGAGTGAGTATCGTTGGAAAAAATGGAGTTCAGTTTCGATGAGAAGGACTTTGTGTCGTGCTGCGGGAGCACTAAATTCGCGAAGGAAATGGCTTCGGCCTCTCCTTTCGGTTCGTTGCAGGACGCTGTTTCTGTTGCCAGAGACGTTTGGTTCAACAGCGTTGATGTCAATGGTTGGCTTCAGGCCTTCTCTGCGCACCCTCAGATCGGTCAAAGCCACGCTCCCTCTGTTGCCTCTGAAGCCAGTGCTCAGTGGAGTAAGGGAGAGCAATCAACTGCTTTAGCAACTGCTACTGGTTCGAGCTTACAGGAACTATCTGAATGGAATGCTCGGTACAGGGAAAAGTTTGGGTTTGTATTTCTCATTTGTGCAGCTGGGAGAAGTACTGATGAGATACTTGCTGAACTGAAGAGACGTTATACAAACAGGCCAATTGTTGAATTTGAGATTGCTGCTCGGGAGCAAATGAAAATTACAGAACTACGCCTTGCAAAGCTCTTTTCAAGTAGAGAAAACATTTCTTCTACAGCTGATAAGAATTCCACTGCTAGAAAGGCAGAAGATCGTATAAGCATTATCAGTAGTCACATGACTGCTACTTCAGAGAGTTCAACAGGCAAATCAATTCAGCATCCTGCCAGAACCCGCCCTCCCATTACCACTCACGTGTTGGATGTTTCGCGGGGGGCTCCAGCTGCTGGTATTGATGTACTTCTGGAGGTGTGGAGGGGCACTCAGTCTCAGCCAACATTTGGGGCCACAGGCGGTGGCAGTTGGGTGTTCCAAGGGTCTTCAAAGACGGATTCGGATGGCCGCAGTGGTCAACTGTTGAGCATAGTCGATGAAGCGAGTCCAGGGATATACAGGATAAGTTTCAACACTGGGAAGTACATCCCAAATGGTTTCTTTCCTTATGTGTCTATAGTGTTTGAAATCAAAGAGTCACAAAAAAGGGAACATTTTCATGTTCCTCTCCTACTTTCACCGTTCTCATTCAGCACTTACCGTGGAAGCTAGGAATATAGGGACAGTTGCCAAAAGAATGCCATGAATTTCTGAAGATTTGATGAAGGGAACTTGTGTTTTTGCTCATAGAACGTGGTTAAAAGGGTACCAAATATAGAAAGGTAATCAATGTATTATTGTTTAGTCAATGCATGTTATATAAGTTCTTTTGAATTAATAATCGAGACTTGCAATATTTGAGACGCTAAATGGCACATTACAGTGCATGAGCAAGGGTTTATGCCTTTTTGCTAGAAGTTTCAATTTACAAACAAGTTAACTCTTATTTGCATTACTTTTGCTTTTAATGATGTAATTATTCATGGAAGTATATTGACATTGCCTCCATATTTTGTTTTTCACAAGTTACAATCAAAGT
>Glyma.03g093200.1 sequence-type=CDS polypeptide=Glyma.03g093200.1.p locus=Glyma.03g093200 ID=Glyma.03g093200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGTTCAGTTTCGATGAGAAGGACTTTGTGTCGTGCTGCGGGAGCACTAAATTCGCGAAGGAAATGGCTTCGGCCTCTCCTTTCGGTTCGTTGCAGGACGCTGTTTCTGTTGCCAGAGACGTTTGGTTCAACAGCGTTGATGTCAATGGTTGGCTTCAGGCCTTCTCTGCGCACCCTCAGATCGGTCAAAGCCACGCTCCCTCTGTTGCCTCTGAAGCCAGTGCTCAGTGGAGTAAGGGAGAGCAATCAACTGCTTTAGCAACTGCTACTGGTTCGAGCTTACAGGAACTATCTGAATGGAATGCTCGGTACAGGGAAAAGTTTGGGTTTGTATTTCTCATTTGTGCAGCTGGGAGAAGTACTGATGAGATACTTGCTGAACTGAAGAGACGTTATACAAACAGGCCAATTGTTGAATTTGAGATTGCTGCTCGGGAGCAAATGAAAATTACAGAACTACGCCTTGCAAAGCTCTTTTCAAGTAGAGAAAACATTTCTTCTACAGCTGATAAGAATTCCACTGCTAGAAAGGCAGAAGAAGATCGTATAAGCATTATCAGTAGTCACATGACTGCTACTTCAGAGAGTTCAACAGGCAAATCAATTCAGCATCCTGCCAGAACCCGCCCTCCCATTACCACTCACGTGTTGGATGTTTCGCGGGGGGCTCCAGCTGCTGGTATTGATGTACTTCTGGAGGTGTGGAGGGGCACTCAGTCTCAGCCAACATTTGGGGCCACAGGCGGTGGCAGTTGGGTGTTCCAAGGGTCTTCAAAGACGGATTCGGATGGCCGCAGTGGTCAACTGTTGAGCATAGTCGATGAAGCGAGTCCAGGGATATACAGGATAAGTTTCAACACTGGGAAGTACATCCCAAATGGTTTCTTTCCTTATGTGTCTATAGTGTTTGAAATCAAAGAGTCACAAAAAAGGGAACATTTTCATGTTCCTCTCCTACTTTCACCGTTCTCATTCAGCACTTACCGTGGAAGCTAG >Glyma.03g093200.2 sequence-type=CDS polypeptide=Glyma.03g093200.2.p locus=Glyma.03g093200 ID=Glyma.03g093200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGTTCAGTTTCGATGAGAAGGACTTTGTGTCGTGCTGCGGGAGCACTAAATTCGCGAAGGAAATGGCTTCGGCCTCTCCTTTCGGTTCGTTGCAGGACGCTGTTTCTGTTGCCAGAGACGTTTGGTTCAACAGCGTTGATGTCAATGGTTGGCTTCAGGCCTTCTCTGCGCACCCTCAGATCGGTCAAAGCCACGCTCCCTCTGTTGCCTCTGAAGCCAGTGCTCAGTGGAGTAAGGGAGAGCAATCAACTGCTTTAGCAACTGCTACTGGTTCGAGCTTACAGGAACTATCTGAATGGAATGCTCGGTACAGGGAAAAGTTTGGGTTTGTATTTCTCATTTGTGCAGCTGGGAGAAGTACTGATGAGATACTTGCTGAACTGAAGAGACGTTATACAAACAGGCCAATTGTTGAATTTGAGATTGCTGCTCGGGAGCAAATGAAAATTACAGAACTACGCCTTGCAAAGCTCTTTTCAAGTAGAGAAAACATTTCTTCTACAGCTGATAAGAATTCCACTGCTAGAAAGGCAGAAGATCGTATAAGCATTATCAGTAGTCACATGACTGCTACTTCAGAGAGTTCAACAGGCAAATCAATTCAGCATCCTGCCAGAACCCGCCCTCCCATTACCACTCACGTGTTGGATGTTTCGCGGGGGGCTCCAGCTGCTGGTATTGATGTACTTCTGGAGGTGTGGAGGGGCACTCAGTCTCAGCCAACATTTGGGGCCACAGGCGGTGGCAGTTGGGTGTTCCAAGGGTCTTCAAAGACGGATTCGGATGGCCGCAGTGGTCAACTGTTGAGCATAGTCGATGAAGCGAGTCCAGGGATATACAGGATAAGTTTCAACACTGGGAAGTACATCCCAAATGGTTTCTTTCCTTATGTGTCTATAGTGTTTGAAATCAAAGAGTCACAAAAAAGGGAACATTTTCATGTTCCTCTCCTACTTTCACCGTTCTCATTCAGCACTTACCGTGGAAGCTAG
>Glyma.03g093200.1.p sequence-type=predicted peptide transcript=Glyma.03g093200.1 locus=Glyma.03g093200 ID=Glyma.03g093200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEFSFDEKDFVSCCGSTKFAKEMASASPFGSLQDAVSVARDVWFNSVDVNGWLQAFSAHPQIGQSHAPSVASEASAQWSKGEQSTALATATGSSLQELSEWNARYREKFGFVFLICAAGRSTDEILAELKRRYTNRPIVEFEIAAREQMKITELRLAKLFSSRENISSTADKNSTARKAEEDRISIISSHMTATSESSTGKSIQHPARTRPPITTHVLDVSRGAPAAGIDVLLEVWRGTQSQPTFGATGGGSWVFQGSSKTDSDGRSGQLLSIVDEASPGIYRISFNTGKYIPNGFFPYVSIVFEIKESQKREHFHVPLLLSPFSFSTYRGS* >Glyma.03g093200.2.p sequence-type=predicted peptide transcript=Glyma.03g093200.2 locus=Glyma.03g093200 ID=Glyma.03g093200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEFSFDEKDFVSCCGSTKFAKEMASASPFGSLQDAVSVARDVWFNSVDVNGWLQAFSAHPQIGQSHAPSVASEASAQWSKGEQSTALATATGSSLQELSEWNARYREKFGFVFLICAAGRSTDEILAELKRRYTNRPIVEFEIAAREQMKITELRLAKLFSSRENISSTADKNSTARKAEDRISIISSHMTATSESSTGKSIQHPARTRPPITTHVLDVSRGAPAAGIDVLLEVWRGTQSQPTFGATGGGSWVFQGSSKTDSDGRSGQLLSIVDEASPGIYRISFNTGKYIPNGFFPYVSIVFEIKESQKREHFHVPLLLSPFSFSTYRGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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