SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.03g088400

Feature Type:gene_model
Chromosome:Gm03
Start:27456569
stop:27463546
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.03g088400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07370.1AT ATCHIP,CHIP JGI N/AIEA
6.3.2.19EC JGI N/AIEA
GO:0016567GO-bp protein ubiquitination JGI N/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity JGI N/AIEA
K09561KEGG Ubiquitin system JGI N/AIEA
KOG4642 KOG Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) JGI N/AIEA
PTHR22904PantherFam TPR REPEAT CONTAINING PROTEIN JGI N/AIEA
PF04564Pfam U-box domain JGI N/AIEA
PF13414Pfam TPR repeat JGI N/AIEA

Gene model name correspondences to Glyma.03g088400 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g22210 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g088400
>Glyma.03g088400.1 sequence-type=CDS polypeptide=Glyma.03g088400.1.p locus=Glyma.03g088400 id=Glyma.03g088400.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGGTCCAAACGCTGCGGCGGCGAAACAAGCGGAAAAGCTCCGAATTGACGGCAACACTTACTTCAAAAAAGACCGTTTCGGTGCCGCCATCGACGCTTACACCGAGGCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAATGATTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAGCAATTCAGTTAAGGCCCACTATATATTGGGGCTCGCATTGCTTCAGAGACAAGAATCTGTCAAGGGAATCAAAGAATTGGAGAAGGCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCTTGAGTGGGAACGATTATCGTCCAAACGATCATGGGAATTGCAGTGCTTGAAAGAAGCTTGTGAGTCTGCTCTGAAGGAAAAACATTTTCTGGATTTCTCTCAAATGGAAGGATTTGTAGATGATGCTACTACTTCCCAGTCAGAACAATTAGAGGCTTTAGAAAGAGTCTTCAATACAGCTGCAGAAGCTGACACACCTACTGAGGTGCCAGATTATTTGTGCTGTAGAATTACACTCGACATTTTCCATGATCCTGTAATCACTCCAAGTGGACTTACATATGAGAGAGCAGTGATTCTTGAGCATCTTCAGAAGGTGGGTAAATTCGACCCAATCACACGGGAACCCCTTGATCCATCACAGTTAGTGCCAAACTTGGCCATTAAGGAAGCGGTCGAGGCATTCTTGGACAAACATGGATGGGCCTACAAGATAGAATAA
Predicted protein sequences of Glyma.03g088400
>Glyma.03g088400.1.p sequence-type=predicted peptide transcript=Glyma.03g088400.1 locus=Glyma.03g088400 id=Glyma.03g088400.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MGPNAAAAKQAEKLRIDGNTYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRNDWERVEEDSRKAIQLDSNSVKAHYILGLALLQRQESVKGIKELEKALDLGRGANPKGYMVEEIWQELAKAKYLEWERLSSKRSWELQCLKEACESALKEKHFLDFSQMEGFVDDATTSQSEQLEALERVFNTAAEADTPTEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGKFDPITREPLDPSQLVPNLAIKEAVEAFLDKHGWAYKIE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo