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Report for Sequence Feature Glyma.03g082300

Feature Type:gene_model
Chromosome:Gm03
Start:22785497
stop:22787638
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g082300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G46560.1AT Tim10/DDP family zinc finger protein JGI N/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0045039GO-bp protein import into mitochondrial inner membrane EnsemblGenomesN/AIEA
GO:0072321GO-bp chaperone-mediated protein transport EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0042719GO-cc mitochondrial intermembrane space protein transporter complex EnsemblGenomesN/AIEA
GO:0042721GO-cc mitochondrial inner membrane protein insertion complex EnsemblGenomesN/AIEA
GO:0008565GO-mf protein transporter activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG3479 KOG Mitochondrial import inner membrane translocase, subunit TIM9 JGI N/AIEA
PTHR10898Panther MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9 JGI N/AIEA
PF02953PFAM Tim10/DDP family zinc finger JGI N/AIEA

Expression Patterns of Glyma.03g082300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g082300 not represented in the dataset
Glyma.03g082300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03g082300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g19460 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g082300
>Glyma.03g082300.2 sequence-type=transcript locus=Glyma.03g082300 ID=Glyma.03g082300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTCGCCAGAAAACAGAGCCGTTACTGGCAAAAAACCTAAAACCTTTGCATACCTTAGTAAACCCCAACACCTGTGTCTCTGTCTCTTTCTTTTTGCGCCTTAATTGAAAAATGGATAAGAACATAATATCAGACTTGGATAATTTTCCTGAAGAAGATAAGCAAAGAATGTCCACCATGGCAGACCAGCTCCAAATCCGGGACAGTCTAAGGATGTATAATTCATTAGTGGAGAAATGTTTCAAGGAATGTGTCAATACATTCTATCGGAAATCCATGACCAAGCAAGAAGAAACTTGTGTTCTCAGATGTGCTCAAAAGTACTTGAGGCTTTCAATGCAAGTTGGCTTGAGATTTTCAGATCTCAACCAAGGATCATCTACAACAGATAAATAGCCTCTGGATGATAGGAACAGAAAGCAAACTTGAGTCTTGAGAGAATGCAAAGAAGTAGTTAACTGAGGTAATTCTCAGCAGAGAGCTGTTAGTGTGAAATGCTAATTTCCAATGACTAATACAGAGTCA
Coding sequences of Glyma.03g082300
>Glyma.03g082300.1 sequence-type=CDS polypeptide=Glyma.03g082300.1.p locus=Glyma.03g082300 ID=Glyma.03g082300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATAAGAACATAATATCAGACTTGGATAATTTTCCTGAAGAAGATAAGCAAAGAATGTCCACCATGGCAGACCAGCTCCAAATCCGGGACAGTCTAAGGATGTATAATTCATTAGTGGAGAAATGTTTCAAGGAATGTGTCAATACATTCTATCGGAAATCCATGACCAAGCAAGAAGAAACTTGTGTTCTCAGATGTGCTCAAAAGTACTTGAGGCTTTCAATGCAAGTTGGCTTGAGATTTTCAGATCTCAACCAAGGATCATCTACAACAGATAAATAG

>Glyma.03g082300.2 sequence-type=CDS polypeptide=Glyma.03g082300.2.p locus=Glyma.03g082300 ID=Glyma.03g082300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATAAGAACATAATATCAGACTTGGATAATTTTCCTGAAGAAGATAAGCAAAGAATGTCCACCATGGCAGACCAGCTCCAAATCCGGGACAGTCTAAGGATGTATAATTCATTAGTGGAGAAATGTTTCAAGGAATGTGTCAATACATTCTATCGGAAATCCATGACCAAGCAAGAAGAAACTTGTGTTCTCAGATGTGCTCAAAAGTACTTGAGGCTTTCAATGCAAGTTGGCTTGAGATTTTCAGATCTCAACCAAGGATCATCTACAACAGATAAATAG
Predicted protein sequences of Glyma.03g082300
>Glyma.03g082300.1.p sequence-type=predicted peptide transcript=Glyma.03g082300.1 locus=Glyma.03g082300 ID=Glyma.03g082300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDKNIISDLDNFPEEDKQRMSTMADQLQIRDSLRMYNSLVEKCFKECVNTFYRKSMTKQEETCVLRCAQKYLRLSMQVGLRFSDLNQGSSTTDK*

>Glyma.03g082300.2.p sequence-type=predicted peptide transcript=Glyma.03g082300.2 locus=Glyma.03g082300 ID=Glyma.03g082300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDKNIISDLDNFPEEDKQRMSTMADQLQIRDSLRMYNSLVEKCFKECVNTFYRKSMTKQEETCVLRCAQKYLRLSMQVGLRFSDLNQGSSTTDK*






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