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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55610.1 | AT | delta 1-pyrroline-5-carboxylate synthase 2 | JGI | N/A | IEA |
| GO:0006561 | GO-bp | proline biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0008652 | GO-bp | cellular amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0016310 | GO-bp | phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0055129 | GO-bp | L-proline biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004349 | GO-mf | glutamate 5-kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0004350 | GO-mf | glutamate-5-semialdehyde dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0016301 | GO-mf | kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016620 | GO-mf | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| KOG4165 | KOG | Gamma-glutamyl phosphate reductase | JGI | N/A | IEA |
| PTHR11063 | Panther | GLUTAMATE SEMIALDEHYDE DEHYDROGENASE | JGI | N/A | IEA |
| PTHR11063:SF2 | Panther | JGI | N/A | IEA | |
| PF00171 | PFAM | Aldehyde dehydrogenase family | JGI | N/A | IEA |
| PF00696 | PFAM | Amino acid kinase family | JGI | N/A | IEA |
| PROSYN-PWY | SoyCyc9 | L-proline biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-3341 | SoyCyc9 | L-proline biosynthesis III | Plant Metabolic Network | ISS | |
| PWY-6922 | SoyCyc9 | L-Nδ-acetylornithine biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-52369 | SoyCyc9-rxn | glutamate-5-semialdehyde dehydrogenase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| ALDH18B3 | delta-1-pyrroline-5-carboxylate synthase |
|
Glyma.03g069400 not represented in the dataset |
Glyma.03g069400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g099800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma03g12240 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g069400.1 sequence-type=CDS polypeptide=Glyma.03g069400.1.p locus=Glyma.03g069400 ID=Glyma.03g069400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAACTCTTGCAAAATGGCCACAAAAATTTGGTCAGCATCAAACCCTCCGAGTTACCCCTCTTGAATGGGGCCGCGTTAACTCTCCTCAACTCGCTCTCCGAAACTCATGAGTACTATGGCAACATAGATCCTTCCAGAGTTTTTGTCACCAAAGTGAAGCGTATCATTGTAAAGGTTGGAACAGCTGTTGTTACTCGAAGTGATGGAAGATTAGCATTGGGCAGAATTGGAGCTCTCTGTGAGCAGCTTAAAGAACTTAGCAGTCAAGGGTATGAAGTCATATTGGTAACTTCAGGTGCTGTTGGTCTTGGCAGGCAAAGGCTTAGATACCGCAAATTGGCCAATAGCAGCTTTTCTGATCTTCAAAAGCCACAAGGAGAGCTTGATGGAAAAGCATGCGCGGCTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAGCTTGATGTGACTTCTTCCCAACTTCTTGTGAATGATGGGTTTTTCAGAGATTCTGGCTTTAGAAAACAACTTTCAGACACGGTGAACTCATTGTTAGATTTAAGGGTTATCCCCATTTTCAATGAAAATGATGCTGTTAGTACTAGGAAGGCACCATATGAGGATTCTTCGGGTATTTTCTGGGACAATGACAGTTTGGCTGGTCTATTAGCCCTTGAACTTAAAGCTGACCTCCTTGTTTTATTGAGTGATGTTGAGGGTCTTTATAGTGGTCCTCCAAGTGACCCAAACTCAAAGTTGATCCATACATATGTAAAAGAGAAGCATCAAGGGGAAATTACTTTTGGAGACAAGTCAAGATTGGGGAGAGGGGGTATGACTGCTAAAGTTAATGCTGCTGTTTGCGCTGCTCATGCTGGCATCCCGGTCATTATAACTAGTGGCTATGCTACAAACAACATCATACGAGTGCTTCAAGGGGAAAGAATAGGTACTGTATTTCATAAAGATGCTCATTTATGGACCAATATAAAGGAAATGAGCGCACGTGAAATGGCAGTTGCAGCACGTGAGGGTTCTAGACAGCTTCAGATCCTCAAATCTGAAGATAGGAGGAAAATATTGCTGGCAATTGCTGATGCATTGGAGAAAAATGAAAGTATGATAAGGCATGAGAATGAGGCTGATGTTGCTGATGCTGTGGTAGCTGGATATGAAAAATCCTTGATATCACGTTTAACCCTGAAGCAAGAGAAGATCTCTAGTCTTGCAAAGTCTGTGCGCCTGCTGGCAGATATGGAAGAACCAATTGGTCAAATTTTAAAAAGGACCGAGCTAGTAGATAAACTCATCCTGGAGAAGACATCATGTCCTTTGGGTGTCCTTCTGGTTATATTTGAGTCTCGACCTGATGCCCTTGTTCAGATAGCTGCATTGGCAATTCGAAGTGGGAATGGTTTACTGCTTAAAGGTGGAAAGGAAGCCCGACGATCAAATGCAATCTTACACAAGGTCATTACTTCAGTGATGCCAGATACTGTTGGTGACAAACTTATTGGGCTTGTGACTTCAAGAGATGAGATTCCTGACCTACTTAAGCTTGATGATGTAATAGATCTAGTGGTCCCTAGAGGCAGTAATAAGCTTGTTTCTCAAATCAAGGAATCAACAAAAATTCCTGTTCTTGGTCATGCTGATGGAATTTGTCATGTATATGTTGACAAGTCTGCTAATTTTGATATGGCAAAGCAGATTGTTAGGGATGCAAAGACTGATTATCCTGCAGCTTGCAATGCAATGGAAACTCTTCTCATACACAAGGATCTGTCAAATAATGGTGGACTTAATGAGCTTGTCCTTGAACTCCAACGAGAAGGTGTTAAAATGTTTGGTGGACCAAGAGCCAGCGGCTTACTAAACATTGCTGAAACGAACACTTTTCATCATGAGTATAGTTCACTTGCTTGCACAGTTGAAATTGTAGAAGATGTATTTGCTGCCATTGACCACATAAATCAACATGGAAGTGCTCATACTGAATGCATTGTTACAGAAGATAGTGAAGTTGCTGAGACTTTCTTAAGTCAAGTTGACAGTGCTGCTGTATTCCACAATGCAAGTACGCGGTTTTGTGATGGAGCACGCTTTGGGCTTGGTGCAGAGGTTGGAATTAGTACAAGTCGAATTCATGCTCGAGGTCCTGTAGGAGTTGAGGGGCTGTTGACAAACAGATGGATTTTGAGAGGGAGTGGGCATGTGGTTGATGGTGATCAAGGGATCGATTACACTTACAAAGAGCTTCCACTAAAAGCATAG
>Glyma.03g069400.1.p sequence-type=predicted peptide transcript=Glyma.03g069400.1 locus=Glyma.03g069400 ID=Glyma.03g069400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MELLQNGHKNLVSIKPSELPLLNGAALTLLNSLSETHEYYGNIDPSRVFVTKVKRIIVKVGTAVVTRSDGRLALGRIGALCEQLKELSSQGYEVILVTSGAVGLGRQRLRYRKLANSSFSDLQKPQGELDGKACAAVGQSSLMALYDTMFSQLDVTSSQLLVNDGFFRDSGFRKQLSDTVNSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSDPNSKLIHTYVKEKHQGEITFGDKSRLGRGGMTAKVNAAVCAAHAGIPVIITSGYATNNIIRVLQGERIGTVFHKDAHLWTNIKEMSAREMAVAAREGSRQLQILKSEDRRKILLAIADALEKNESMIRHENEADVADAVVAGYEKSLISRLTLKQEKISSLAKSVRLLADMEEPIGQILKRTELVDKLILEKTSCPLGVLLVIFESRPDALVQIAALAIRSGNGLLLKGGKEARRSNAILHKVITSVMPDTVGDKLIGLVTSRDEIPDLLKLDDVIDLVVPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANFDMAKQIVRDAKTDYPAACNAMETLLIHKDLSNNGGLNELVLELQREGVKMFGGPRASGLLNIAETNTFHHEYSSLACTVEIVEDVFAAIDHINQHGSAHTECIVTEDSEVAETFLSQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTNRWILRGSGHVVDGDQGIDYTYKELPLKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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