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Report for Sequence Feature Glyma.03g063900

Feature Type:gene_model
Chromosome:Gm03
Start:10258579
stop:10265061
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g063900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38120.1AT Transmembrane amino acid transporter family protein JGI N/AIEA
GO:0003333GO-bp amino acid transmembrane transport EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0015171GO-mf amino acid transmembrane transporter activity EnsemblGenomesN/AIEA
KOG1303 KOG Amino acid transporters JGI N/AIEA
PTHR22950Panther AMINO ACID TRANSPORTER JGI N/AIEA
PTHR22950:SF14Panther JGI N/AIEA
PF01490PFAM Transmembrane amino acid transporter protein JGI N/AIEA

Proteins Associated with Glyma.03g063900
LocusGene SymbolProtein Name
LAX4 auxin transporter-like protein 4

Expression Patterns of Glyma.03g063900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03g063900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g09140 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g063900
>Glyma.03g063900.1 sequence-type=CDS polypeptide=Glyma.03g063900.1.p locus=Glyma.03g063900 ID=Glyma.03g063900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGTCTCAGAAGCAAGGAGAGGACGCAATAATCACAAACCTCAACCACACAGAACATGAAGGTGGCAGCACGAGCACAAGGGAAGAAGAGGAGCAAGACCATTCCATGTTCAACTTCAAGAGCCTTTTATGGCATGGTGGTTCTGTTTGGGATGCATGGTTCAGCTGTGCTTCAAATCAAGTAGCTCAAGTGCTTTTGACACTGCCATACTCCTTCGCTCAACTTGGCATGGTATCAGGCATCTTACTTCAGATCTTCTATGGCCTTATTGGAAGCTGGACTGCTTATCTAGTCAGTGTCCTCTACATAGAGTACCGCACCAGGAAGGAAAAGGAAAATGTCAGCTTCAAGAACCACGTTATTCAGTGGTTCGAGGTCCTTGATGGGTTACTTGGTCGATATTGGAAAGCAGTGGGGCTAGCCTTCAACTGTACTTTCCTCCTATTTGGATCTGTGATACAGCTTATAGCATGTGCAAGTAACATCTATTACATAAACGACAAATTGTATAAACGGACATGGACTTATATTTTTGGAGCTTGCTGTGCATTCACTGTGTTCATACCTTCCTTCCACAATTACCGTATATGGTCTTTTTTGGGCCTTGGAATGACCACTTACACGGCTTGGTACCTTGCTATTGCAGCCATCCTTCATGGCCAGGTAGAAAATGTTACACACTCCGGTCCAACAAAGCTAATACTATACTTCACTGGAGCCACTAACATACTCTACACGTTTGGAGGACATGCTGTGACTGTGGAGATTATGCATGCCATGTGGCAGCCCCGAAAGTTCAAATCCATCTACTTTCTGGCCACTTTGTACGTTTTCACTCTAACGATCCCTTCTGCCGTCGCCGTTTATTGGTCTTTCGGTGATCAGCTCCTTGACCACTCAAATGCATTCTCTCTGCTCCCCAAGAATGTCTTCCGTGACGCCGCCGTCATCCTCATGCTCATTCACCAGTTCATCACATTTGGATTTGCGTGCACCCCATTATATTTTGTGTGGGAGAAGGTGATTGGGATGCACGACACAAAGAGCATTTGGTTAAGGGCACTTGCACGGTTTCCAGTGGTGCTACCTATATGGTTCTTGGCCATAATCTTCCCTTTCTTTGGGCCCATAAATTCAGCTGTTGGATCTCTACTCGTTAGCTTCACTGTCTACATCATCCCTGCCCTAGCCCACATGCTCACTTATAGAAATGCCTCAGCCAGACAGAATGCTGCAGAGAAGCCTCCTTTCTTCATGCCAAGCTGGACTGCAATGTATGTCTTCAATGCATTCATTATTGGATGGGTTTTGGTGGTTGGATTTGGGCTTGGAGGATGGGCCAGCATGATCAACTTGATAAACCAAATTGACACATTTGGACTTTTTGCCAAATGCTACCAATGCCCTGAACCACCGCCACCTGCTGGAGCACCACCCCCTCTTACCCATCCAGTGGTGGAGGGAGGGGTTGACCTTGTAGAACCATGGGCACCTCCAAACTTGTTGAAGATTATTTAA
Predicted protein sequences of Glyma.03g063900
>Glyma.03g063900.1.p sequence-type=predicted peptide transcript=Glyma.03g063900.1 locus=Glyma.03g063900 ID=Glyma.03g063900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLSQKQGEDAIITNLNHTEHEGGSTSTREEEEQDHSMFNFKSLLWHGGSVWDAWFSCASNQVAQVLLTLPYSFAQLGMVSGILLQIFYGLIGSWTAYLVSVLYIEYRTRKEKENVSFKNHVIQWFEVLDGLLGRYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDKLYKRTWTYIFGACCAFTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAAILHGQVENVTHSGPTKLILYFTGATNILYTFGGHAVTVEIMHAMWQPRKFKSIYFLATLYVFTLTIPSAVAVYWSFGDQLLDHSNAFSLLPKNVFRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSIWLRALARFPVVLPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPALAHMLTYRNASARQNAAEKPPFFMPSWTAMYVFNAFIIGWVLVVGFGLGGWASMINLINQIDTFGLFAKCYQCPEPPPPAGAPPPLTHPVVEGGVDLVEPWAPPNLLKII*






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