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Report for Sequence Feature Glyma.03g056700

Feature Type:gene_model
Chromosome:Gm03
Start:7802102
stop:7805630
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g056700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G05580.1AT fatty acid desaturase 8 JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006629GO-bp lipid metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016717GO-mf oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water EnsemblGenomesN/AIEA
GO:0016717GO-mf oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water JGI N/AIEA
PTHR19353Panther FATTY ACID DESATURASE 2 JGI N/AIEA
PTHR19353:SF7Panther JGI N/AIEA
PF00487PFAM Fatty acid desaturase JGI N/AIEA
PF11960PFAM Domain of unknown function (DUF3474) JGI N/AIEA
PWY-5997SoyCyc9 α-linolenate biosynthesis I (plants and red algae) Plant Metabolic Network ISS
PWY-6013SoyCyc9 crepenynate biosynthesis Plant Metabolic Network ISS
GN7V-52852SoyCyc9-rxn Δ12-fatty acid dehydrogenase Plant Metabolic Network ISS

Proteins Associated with Glyma.03g056700
LocusGene SymbolProtein Name
FAD8-2 omega-3 fatty acid desaturase, chloroplastic-like
FAD8.2 omega-3 fatty acid desaturase, chloroplastic

Expression Patterns of Glyma.03g056700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g056700
ParalogEvidenceComments
Glyma.01g120400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g056700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g07570 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g056700
>Glyma.03g056700.1 sequence-type=CDS polypeptide=Glyma.03g056700.1.p locus=Glyma.03g056700 ID=Glyma.03g056700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAACCTGGGTTTTATCAGAATGTGGCTTAAGGCCTCTTCCACCAGTGTTTCCACGGTCAACAAGACCCATTTCGTGCCAAAAACCTTCAAAGTCTAGATTTTTAAGCACAAACAAGGGTGTGCCAGATCTGAATCTCCAAGCAAGAGGGTTAACATGCTGTAGTTTTAGGGATAGAAAGTGGGAATTGGGAGTGAGTGCTCCACTGAAATTTGCCACCAATGAGGGAGAGGAAGAAGAGAGAACCAATGGGGCTAATAATGGGGTTGGTGAGGAAGTTTCAGAATTTGACCCTAGTGCACCACCACCCTTCAAATTGGCAGATATTAGAGCTGCCATTCCTAAACACTGTTGGGTGAAGGACCCTTGGAAGTCCATGAGTTATGTTGTTAGAGATGTCATTGTGGTTTTTGGGTTGGCTGCTGCTGCAGCTTATCTCAACAATTGGGTTGTTTGGCCTCTCTATTGGGCTGCTCAGGGAACCATGTTCTGGGCCCTCTTTGTTCTTGGTCATGATTGTGGTCATGGAAGCTTTTCAAACAATCCCAAGTTGAACAGTGTTGCTGGCCACTTGCTGCATTCATCAATTCTAGTACCTTATCATGGATGGAGAATCAGTCATAGAACACATCATCAAAACCATGGCCATGTCGAAAATGATGAATCTTGGCACCCATTGCCAGAGAAAATTTTCAAGAGCTTGGATAATGTAACACGCATTTTAAGATTTACTCTACCTTTCCCATTGCTTGCATATCCTATCTACCTGTGGAGCAGGAGTCCCGGGAAGACTGGTTCTCACTTTAATCCAGACAGTGACTTGTTTGTTCCCAGTGAGAGAAAAGATGTTATTACTTCAACAATTTGTTGGACAGCTATGGCTGCTTTGCTTGTTGGTCTGGGATTTGTGATGGGTCCAGTTCAATTGCTTAAGCTTTATGGCATTCCCTATGCGATTTTTGTTATGTGGTTGGATTTGGTGACTTATTTGCATCACCATGGCCATGAAGACAAATTACCTTGGTATCGTGGAGAGGAATGGAGCTACCTTAGGGGTGGCCTTACAACTATTGATCGTGACTACGGATGGATCAATAACATCCACCACGACATTGGAACCCATGTCATTCATCACCTCTTTCCTCAAATACCACACTATCACTTAATAGAAGCAACTGAAGCAGCTAAGCCAGTTCTTGGTCAATACTACCGCGAACCAAAGAAGTCTAGTCCTCTTCCAATTTACCTCATTGGAGAATTGTTAAGAAGCATGAAGAAAGACCATTTTGTCAGTGACAGTGGCGATATTGTATACTATCAAACAGACCCTACACTTAGTAGCTCTTCCACATCACAGTAA
Predicted protein sequences of Glyma.03g056700
>Glyma.03g056700.1.p sequence-type=predicted peptide transcript=Glyma.03g056700.1 locus=Glyma.03g056700 ID=Glyma.03g056700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATWVLSECGLRPLPPVFPRSTRPISCQKPSKSRFLSTNKGVPDLNLQARGLTCCSFRDRKWELGVSAPLKFATNEGEEEERTNGANNGVGEEVSEFDPSAPPPFKLADIRAAIPKHCWVKDPWKSMSYVVRDVIVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNPKLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPEKIFKSLDNVTRILRFTLPFPLLAYPIYLWSRSPGKTGSHFNPDSDLFVPSERKDVITSTICWTAMAALLVGLGFVMGPVQLLKLYGIPYAIFVMWLDLVTYLHHHGHEDKLPWYRGEEWSYLRGGLTTIDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGQYYREPKKSSPLPIYLIGELLRSMKKDHFVSDSGDIVYYQTDPTLSSSSTSQ*






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