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Report for Sequence Feature Glyma.03g056000

Feature Type:gene_model
Chromosome:Gm03
Start:7705307
stop:7706624
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g056000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G40170.1AT Stress induced protein JGI N/AIEA
GO:0009737GO-bp response to abscisic acid EnsemblGenomesN/AIEA
GO:0048316GO-bp seed development EnsemblGenomesN/AIEA
GO:0050821GO-bp protein stabilization EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
PF00477PFAM Small hydrophilic plant seed protein JGI N/AIEA

Proteins Associated with Glyma.03g056000
LocusGene SymbolProtein Name
Em SLE2-1 Group-1 late embryogenesis abundant protein 2 gene
SLE2 Protein SLE2

Expression Patterns of Glyma.03g056000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g056000
ParalogEvidenceComments
Glyma.01g119600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g056000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g07470 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g056000
>Glyma.03g056000.1 sequence-type=CDS polypeptide=Glyma.03g056000.1.p locus=Glyma.03g056000 ID=Glyma.03g056000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCTCGTCAAAACAACAAGCAAGAGCTTGATGAAAGAGCAAGGCAAGGAGAGACTGTTGTCCCGGGTGGAACTGGTGGCAAGAGCCTGGAGGCTCAGCAACACCTTGCTGAAGGAAGGAGCAAGGGAGGGCAAACAAGGAAGGAACAGCTGGGTACAGAAGGGTACCAGGAAATGGGACGCAAAGGAGGGTTGAGCACTGTGGAGAAATCAGGAGAAGAACGTGCTCAAGAGGAAGGCATTGGCATCGATGAGTCCAAGTTCAGGACTGGTAATAACAAGAACCAGAATCAGAACGAAGACCAGGATAAGTGA
Predicted protein sequences of Glyma.03g056000
>Glyma.03g056000.1.p sequence-type=predicted peptide transcript=Glyma.03g056000.1 locus=Glyma.03g056000 ID=Glyma.03g056000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASRQNNKQELDERARQGETVVPGGTGGKSLEAQQHLAEGRSKGGQTRKEQLGTEGYQEMGRKGGLSTVEKSGEERAQEEGIGIDESKFRTGNNKNQNQNEDQDK*






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