SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| PTHR23067 | Panther | DOUBLE-STRANDED RNA-BINDING ZINC FINGER PROTEIN | JGI | N/A | IEA |
| PF12171 | PFAM | Zinc-finger double-stranded RNA-binding | JGI | N/A | IEA |
|
Glyma.03g033300 not represented in the dataset |
Glyma.03g033300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g134400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
>Glyma.03g033300.1 sequence-type=CDS polypeptide=Glyma.03g033300.1.p locus=Glyma.03g033300 ID=Glyma.03g033300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATTATTCAGACTACAGCTACCAACAGCAACCGCAACAACATTCCTATGGCTACGACCCTTCTCAGATCCCAATCCAACCCTACGATCAATCCTATGCTGCGTACCAACAATACTACGCTTACAATCCCCAATACGCGTATTACCCCAACGCACACCAAACCCAGTTTCAGTTCCAACCCGAAACCGCTCCGCTTCACCCTCCCGGCGTCAATCCCGCCGCTCTGGAACCCACCCCGACTGGGCCATCTCAATACAGAGGTAGGGGTGGCAGGGGTGGTAGACCATTTAGAGGGGCTGGTCGTGGTCGAGGCCATGGTAGGGGACATGGAATGGGGGGTGGTAGACACATACCATCTCATTCTTCTGGACCTGCTTTTTCTAATGTGCCAGCTCGAGTGCAACCACCAGTACCACCGCGTAAAGTGTGCTGTGAAATTTGTAAGGTTGAGTGCAATAGTCCAGAAATCTTGGAGCAACATAAGGTTGGGAGGAAACATCAGAAGAATATGAGGGTGCATGAAGAATCGCAAAGGCGCAATGCTATAAATGGACAACAAAGTGAGAAAATTCCTACCTCTCAATTGAACTTAACAGACCAACCTAAGGAAGTTCAGGAGTCCGAGAAAAATGAATGCCCCACAGAAAATATGGGCTCGGGGGTTATAATCAATAGTCACAAGGAGGAAATGCAGCTGCAGAATAATGTAGGAAACATTTCTGAGGTTCCAGCTGAAGTGCCCGAGGGAAAAACCGAGGATAACTCTGCTGCAAGAGGCCAAGGATTGAAGCGGAAGAAGAAAGGAGGAAAAGGAGGTAAATACATGAGAACTAATGATGGTTCTAAGCCAGTGGAACCTGCACAAACTATGTCTTTTAGATGTGAGCTGTGTGATGTTAAATGTGAGTCACAAGTTGTTTACCAGAGTCATGTGGCTGGGAAAAAACACCTATCAAAACTAAGGCGTGCTTCATCTGGAGTAGGCCAGCACCAGCAGCAAGCTCTGTCTGGGGCACTCTTAGGGCTTCAAGCAATTTACCCACCTGACATCAATGCTCTGTCTAATGCAATTAATGTTCAAGTCCAACAAGGTGATAATGATCCGCAGGTACTTTTGGCTCAGCTCCTAATGACCGTACTATCTCAAGCACAGGTTCCAGCAACGGCACCAGTGACAGGTGGCGTGGTCGCTCAGATACCAGTACCCACATCTATGGCTGGACCGAGTTATGAACCCCAGTTGTTGCAGACAAATCCTTCTGGGGAAACAAAAACTGAGCTGCCAGGTTCAAGTGTCGGCACCCAAATTGAAGGTGGAGGTTCTGAAACTAAACAACAGGTGTGA
>Glyma.03g033300.1.p sequence-type=predicted peptide transcript=Glyma.03g033300.1 locus=Glyma.03g033300 ID=Glyma.03g033300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDYSDYSYQQQPQQHSYGYDPSQIPIQPYDQSYAAYQQYYAYNPQYAYYPNAHQTQFQFQPETAPLHPPGVNPAALEPTPTGPSQYRGRGGRGGRPFRGAGRGRGHGRGHGMGGGRHIPSHSSGPAFSNVPARVQPPVPPRKVCCEICKVECNSPEILEQHKVGRKHQKNMRVHEESQRRNAINGQQSEKIPTSQLNLTDQPKEVQESEKNECPTENMGSGVIINSHKEEMQLQNNVGNISEVPAEVPEGKTEDNSAARGQGLKRKKKGGKGGKYMRTNDGSKPVEPAQTMSFRCELCDVKCESQVVYQSHVAGKKHLSKLRRASSGVGQHQQQALSGALLGLQAIYPPDINALSNAINVQVQQGDNDPQVLLAQLLMTVLSQAQVPATAPVTGGVVAQIPVPTSMAGPSYEPQLLQTNPSGETKTELPGSSVGTQIEGGGSETKQQV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
