SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.03g033200

Feature Type:gene_model
Chromosome:Gm03
Start:3845868
stop:3850391
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g033200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G12244.1AT Polynucleotidyl transferase, ribonuclease H-like superfamily protein JGI N/AIEA
GO:0000967GO-bp rRNA 5'-end processing EnsemblGenomesN/AIEA
GO:0006139GO-bp nucleobase-containing compound metabolic process EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0006310GO-bp DNA recombination JGI N/AIEA
GO:0006364GO-bp rRNA processing EnsemblGenomesN/AIEA
GO:0006974GO-bp cellular response to DNA damage stimulus JGI N/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0016788GO-mf hydrolase activity, acting on ester bonds JGI N/AIEA
PF03652PFAM Uncharacterised protein family (UPF0081) JGI N/AIEA

Expression Patterns of Glyma.03g033200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03g033200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g03920 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g033200
>Glyma.03g033200.1 sequence-type=CDS polypeptide=Glyma.03g033200.1.p locus=Glyma.03g033200 ID=Glyma.03g033200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGACGCAGCAAGTGCTTCCTCTACCACCCCACAAACCGTTTCTTCGTTGTTCACCTTCGAACCCATCCTTTGTAAATGGCAAAAATGGTTATTGCAGAGTAAAGGCATTGACTTTGGATGAACTTCCCCCAAACGCGCTTCGGAAGAAGAGAGAGCCGCAATGGAGAGGAGGCTTCAGCCTCGGACTCGACTTGGGATTGGCTCGCACTGGCCTCGCCCTCAGCAAAGGCTTCTCTATTCGCCCTTTAACCGTTTTGGAACTGCGAGGACAGAAGCTTGAGGTTCAGATTATTAACATTGCCGAAGAAGAGGAGGTTGATGAGTTTATAATTGGACTTCCAAAATCTTCTGATGGGAAGGAAACACCACAGTCGAACAAAGTCCGAAGTGTTGCTGGAAGGCTTGCTGTTCGAGCTGCTGAGAGGGGTTGGAGAGTGTATCTACAGGATGAACATGGGACAACAGAAGAAGCCAAAGATAGAATGATCAACATGAGTTTAAGTAAGTCCTCTCAGCAGAAGAAACTTGATGCCTATGCTGCCATGATGGTACTGGAGAGATATTTCTCCACGTCAGGTCAGGGTACTGAACTTGTTTTGCCCAAGAATCTAGAATTACAAGCAAAACTTCAAAGGGGTCCTCCCAAAGATGTTGATTTTTTCTCGGACGAAGACTAA
Predicted protein sequences of Glyma.03g033200
>Glyma.03g033200.1.p sequence-type=predicted peptide transcript=Glyma.03g033200.1 locus=Glyma.03g033200 ID=Glyma.03g033200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWTQQVLPLPPHKPFLRCSPSNPSFVNGKNGYCRVKALTLDELPPNALRKKREPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEEEEVDEFIIGLPKSSDGKETPQSNKVRSVAGRLAVRAAERGWRVYLQDEHGTTEEAKDRMINMSLSKSSQQKKLDAYAAMMVLERYFSTSGQGTELVLPKNLELQAKLQRGPPKDVDFFSDED*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo