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Report for Sequence Feature Glyma.03g033100

Feature Type:gene_model
Chromosome:Gm03
Start:3833718
stop:3843653
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g033100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G18950.1AT homogentisate phytyltransferase 1 JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0004659GO-mf prenyltransferase activity JGI N/AIEA
GO:0016765GO-mf transferase activity, transferring alkyl or aryl (other than methyl) groups EnsemblGenomesN/AIEA
PTHR11048Panther PRENYLTRANSFERASES JGI N/AIEA
PTHR11048:SF1Panther HOMOGENTISATE PHYTYLTRANSFERASE 1, CHLOROPLASTIC JGI N/AIEA
PF01040PFAM UbiA prenyltransferase family JGI N/AIEA
PWY-2055SoyCyc9 superpathway of pterocarpan biosynthesis (via daidzein) Plant Metabolic Network ISS
PWY-2762SoyCyc9 glyceollin biosynthesis Plant Metabolic Network ISS
GN7V-48984SoyCyc9-rxn trihydroxypterocarpan dimethylallyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.03g033100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g033100
ParalogEvidenceComments
Glyma.01g134600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g033100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g03910 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g033100
>Glyma.03g033100.1 sequence-type=CDS polypeptide=Glyma.03g033100.1.p locus=Glyma.03g033100 ID=Glyma.03g033100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCATTGATTCTTATATCTTCTCCTAATGCTTGTTCAATCACAACTGGTGGGAATCTCCGGCGGAGTAAACATTCCACCAAGAATTTTTACTATGCAAGTTTTGGTGAATTAAAAGCTTCACAAGAGAAAAGAGCAACTCAAACTGAATATAATCATTTGAGGTTGCAGCAATCAAGTTTGAACCATTATTACAAATGCATTGAAGGAGGTTCTACATATCAACAATATACCAGAAAATATGTTTTGAAAGCAGTCCCTAGACCATCTTTTGATTTTGAACCTCATGCTTCTGATCCCAAAAACATTTTAGACTCTGTCAAAAAACTCTTGGTTGCTTTCTATTGGTTTTGCTATCCTTACTCAATGATTGGCCAAATGTTAAGCATAATTTCTACGTCTCTTCTTGCAGTGGAGAAACTATCATATATATCTCCACTATTTTTTATTGGTGTGTTACAGGCTATGGTACCTCAGTTGTTTATGAGTATTTATATGAATGGTGTGAATCAATTGTTTGACGTTGAAATAGACAAGATTAACAAACCACATCTTCCATTGGCATCTGGTCAATTATCCTTTAGAACTGGCGCCATTATTGTTGCATCATGTTTAACTTTGAGTCTTTGGATTAGCTGGATTGTAGGTTCTTGGCCATTGATTTGGAATATTGGATTGTGCTCTTTGATATGGACAGCTTATTCAATCAATGCACCTTTGTTGAGATGGAAGAGACATCCATTGCTAGCGGCAATGTGTATTTTTGCAACTATGGCACTTATATTTCCAATTACAATATTCCTTCATATACAGACCTTTGTGTTGAAGAGGCCCACAGTCTTTTCCAGATCATTGATTTTTGAGGTTGCATTCATGAGTTTATACTCTATAGGTATAGCCTTGTACAAGGATGTACCTGACATTGAAGGAGATAAAGCATTTGGTATTCATTCTATTTCGGCACGTTTAGGTCAAAAATGGGTATTTTGGCTTTGTGTTTTCCTTTTTGAAATGGCTTTTGGAGTTGGCCTTCTGGCTGGAGCATCATCTTCTTACCTTTGGATTAAAATTGTCACGGGTTTGGGATATGCTGTTCTTGCTTCAGTACTTTGGCACCAGGCCAAAATTGTAGATTTGAAAAGCAAAACTTCAATGAGATCATTCTATATGTTGATTTGGAAGTTGTTGTACGTGGCGTACTTTCTCATGCCTTTAATTAGCCAAGGATGTCATTGA
Predicted protein sequences of Glyma.03g033100
>Glyma.03g033100.1.p sequence-type=predicted peptide transcript=Glyma.03g033100.1 locus=Glyma.03g033100 ID=Glyma.03g033100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASLILISSPNACSITTGGNLRRSKHSTKNFYYASFGELKASQEKRATQTEYNHLRLQQSSLNHYYKCIEGGSTYQQYTRKYVLKAVPRPSFDFEPHASDPKNILDSVKKLLVAFYWFCYPYSMIGQMLSIISTSLLAVEKLSYISPLFFIGVLQAMVPQLFMSIYMNGVNQLFDVEIDKINKPHLPLASGQLSFRTGAIIVASCLTLSLWISWIVGSWPLIWNIGLCSLIWTAYSINAPLLRWKRHPLLAAMCIFATMALIFPITIFLHIQTFVLKRPTVFSRSLIFEVAFMSLYSIGIALYKDVPDIEGDKAFGIHSISARLGQKWVFWLCVFLFEMAFGVGLLAGASSSYLWIKIVTGLGYAVLASVLWHQAKIVDLKSKTSMRSFYMLIWKLLYVAYFLMPLISQGCH*






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