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Report for Sequence Feature Glyma.03g027600

Feature Type:gene_model
Chromosome:Gm03
Start:3029154
stop:3033239
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g027600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G45280.1AT RAS associated with diabetes protein 51C JGI N/AIEA
GO:0000707GO-bp meiotic DNA recombinase assembly EnsemblGenomesN/AIEA
GO:0000724GO-bp double-strand break repair via homologous recombination EnsemblGenomesN/AIEA
GO:0006260GO-bp DNA replication JGI N/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006312GO-bp mitotic recombination EnsemblGenomesN/AIEA
GO:0007131GO-bp reciprocal meiotic recombination EnsemblGenomesN/AIEA
GO:0007140GO-bp male meiotic nuclear division EnsemblGenomesN/AIEA
GO:0007141GO-bp male meiosis I EnsemblGenomesN/AIEA
GO:0007143GO-bp female meiotic nuclear division EnsemblGenomesN/AIEA
GO:0010212GO-bp response to ionizing radiation EnsemblGenomesN/AIEA
GO:0016444GO-bp somatic cell DNA recombination EnsemblGenomesN/AIEA
GO:0042148GO-bp strand invasion EnsemblGenomesN/AIEA
GO:0045003GO-bp double-strand break repair via synthesis-dependent strand annealing EnsemblGenomesN/AIEA
GO:0051321GO-bp meiotic cell cycle EnsemblGenomesN/AIEA
GO:0005657GO-cc replication fork EnsemblGenomesN/AIEA
GO:0033063GO-cc Rad51B-Rad51C-Rad51D-XRCC2 complex EnsemblGenomesN/AIEA
GO:0000150GO-mf recombinase activity EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000400GO-mf four-way junction DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003678GO-mf DNA helicase activity JGI N/AIEA
GO:0003690GO-mf double-stranded DNA binding EnsemblGenomesN/AIEA
GO:0003697GO-mf single-stranded DNA binding EnsemblGenomesN/AIEA
GO:0004520GO-mf endodeoxyribonuclease activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008094GO-mf DNA-dependent ATPase activity EnsemblGenomesN/AIEA
KOG1434 KOG Meiotic recombination protein Dmc1 JGI N/AIEA
PTHR22942Panther RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER JGI N/AIEA
PTHR22942:SF14Panther DNA REPAIR PROTEIN RAD51 HOMOLOG 3 JGI N/AIEA
PF08423PFAM Rad51 JGI N/AIEA
GN7V-67060SoyCyc9-rxn ATP diphosphatase Plant Metabolic Network ISS

Expression Patterns of Glyma.03g027600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g027600 not represented in the dataset
Glyma.03g027600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03g027600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g03210 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g027600
>Glyma.03g027600.2 sequence-type=transcript locus=Glyma.03g027600 ID=Glyma.03g027600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCGACCCTCCTCCTTGAAGAAACAAATCATCATTGATGTTAATTTTGATTGAGTATTATTGAGTTTTTTTTGTGAACATAAGGAGTGAGAATTTGCCAaagaagaagaagaagaaACATGGTGGAAGGTTAGAGAGTGAGAGAGTGTGAAGCATGGAAGTGGGTATGCTTCCAATCTCAGCTTCAAAGAGAGGAAAACTCTTGGCTGCTGGTTACACCACTCTCGATGCCATTGCTCGTGCCTCCCCCACCCACCTTGCTCGAGATATTGATGTTTCTGAGAGTGAAGCCACGGAAATTCTGAATCTTGCAAGCAAACCTAGTGCTTTGGAGAGACCGAATGGGTCTCACACTGCTGTTGTTGGTGATCTGGATAACATCCTTGGTGGAGGAATTAAGTGCAAAGAAGTCACTGAAATAGGTGGAGTTCCAGGCATTGGTAAAACACAAATTGGGATTCAACTTGCGGTAAATGTTCAGATTCCACAAGAATATGGTGGCCTAGGAGGGAAGGCAATATACATCGACACAGAAGGAAGCTTTATGGTTGAACGTGTTCTACAAATTGCTGAAGCATGCATAGAAGATATGGCAGAATACAGCCGGCACTTTCATAAGGATTTTCAAGCTTGTGATGTTAAAATGCACCCTAATAATATCTTGGAAAATATATTCTATTTTCGTGTTTGCAGCTACACTGAGCAAATTGCTTTGATAAATTACTTGGACAAATTCATCACAGAGAATAAAGATGTAAAGATCCTCATTGTTGACAGTGTTACTTTCCACTTCCGCCAAGACTTTGATGATATGGCTCTCAGGACTCGATTACTCAGTGAAATGGCTTTGAAGTTGATGAAGCTTGCAAAAAAATTCCGTTTGGCTGTTGTTATGTTCAATCAAGTAACAACCAAGCATATTGAAGGTTCATTTCAATTGACCCTTGCACTAGGAGATAGTTGGTCGCATTCATGCACAAATAGGATAATCTTGTTTTGGAATGGCAACGAACGACACGCATTTATCGACAAGTCCCCTTCTCTGAAATCAGCATCAGCTCCATATTCTGTGACAACTAGAGGGATACGCAATTCTACTTCAAGCTGCAAACGAATCAAGATGATGTGAGATTTTGAGTAGGAAGATAGTCTATAACTCAACCTTACCTCACCATTTTTGCTTATTTCTTTACCAAATTTATGGACATAACAAGATTATACCACATGCTTCCTACAATCCTTGCTTTGTGTAGCCTCAAAGTACAGTGAGTTTTGGTTTGGTTTATATATAAAGCTCATCTTAATTGAGTTTGTCTTAAAGTGAACACATATAAGGGGTTATTCACCCTTAAAGTACATACATATTAGAGATGTACTTACTCTAAAGTTTTTCCTTGGATTTACTTGATATTTGAAAAAACTATACAGATTACAGAATAATTAACCTCAC
Coding sequences of Glyma.03g027600
>Glyma.03g027600.1 sequence-type=CDS polypeptide=Glyma.03g027600.1.p locus=Glyma.03g027600 ID=Glyma.03g027600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGTGGGTATGCTTCCAATCTCAGCTTCAAAGAGAGGAAAACTCTTGGCTGCTGGTTACACCACTCTCGATGCCATTGCTCGTGCCTCCCCCACCCACCTTGCTCGAGATATTGATGTTTCTGAGAGTGAAGCCACGGAAATTCTGAATCTTGCAAGCAAACCTAGTGCTTTGGAGAGACCGAATGGGTCTCACACTGCTGTTGTTGGTGGTGGTCAGACTGCCTGGGATATGCTCAATGATGAAAAGTTTTCTTCTTACATTACCACATCTTGTGCAGATCTGGATAACATCCTTGGTGGAGGAATTAAGTGCAAAGAAGTCACTGAAATAGGTGGAGTTCCAGGCATTGGTAAAACACAAATTGGGATTCAACTTGCGGTAAATGTTCAGATTCCACAAGAATATGGTGGCCTAGGAGGGAAGGCAATATACATCGACACAGAAGGAAGCTTTATGGTTGAACGTGTTCTACAAATTGCTGAAGCATGCATAGAAGATATGGCAGAATACAGCCGGCACTTTCATAAGGATTTTCAAGCTTGTGATGTTAAAATGCACCCTAATAATATCTTGGAAAATATATTCTATTTTCGTGTTTGCAGCTACACTGAGCAAATTGCTTTGATAAATTACTTGGACAAATTCATCACAGAGAATAAAGATGTAAAGATCCTCATTGTTGACAGTGTTACTTTCCACTTCCGCCAAGACTTTGATGATATGGCTCTCAGGACTCGATTACTCAGTGAAATGGCTTTGAAGTTGATGAAGCTTGCAAAAAAATTCCGTTTGGCTGTTGTTATGTTCAATCAAGTAACAACCAAGCATATTGAAGGTTCATTTCAATTGACCCTTGCACTAGGAGATAGTTGGTCGCATTCATGCACAAATAGGATAATCTTGTTTTGGAATGGCAACGAACGACACGCATTTATCGACAAGTCCCCTTCTCTGAAATCAGCATCAGCTCCATATTCTGTGACAACTAGAGGGATACGCAATTCTACTTCAAGCTGCAAACGAATCAAGATGATGTGA

>Glyma.03g027600.2 sequence-type=CDS polypeptide=Glyma.03g027600.2.p locus=Glyma.03g027600 ID=Glyma.03g027600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGTGGGTATGCTTCCAATCTCAGCTTCAAAGAGAGGAAAACTCTTGGCTGCTGGTTACACCACTCTCGATGCCATTGCTCGTGCCTCCCCCACCCACCTTGCTCGAGATATTGATGTTTCTGAGAGTGAAGCCACGGAAATTCTGAATCTTGCAAGCAAACCTAGTGCTTTGGAGAGACCGAATGGGTCTCACACTGCTGTTGTTGGTGATCTGGATAACATCCTTGGTGGAGGAATTAAGTGCAAAGAAGTCACTGAAATAGGTGGAGTTCCAGGCATTGGTAAAACACAAATTGGGATTCAACTTGCGGTAAATGTTCAGATTCCACAAGAATATGGTGGCCTAGGAGGGAAGGCAATATACATCGACACAGAAGGAAGCTTTATGGTTGAACGTGTTCTACAAATTGCTGAAGCATGCATAGAAGATATGGCAGAATACAGCCGGCACTTTCATAAGGATTTTCAAGCTTGTGATGTTAAAATGCACCCTAATAATATCTTGGAAAATATATTCTATTTTCGTGTTTGCAGCTACACTGAGCAAATTGCTTTGATAAATTACTTGGACAAATTCATCACAGAGAATAAAGATGTAAAGATCCTCATTGTTGACAGTGTTACTTTCCACTTCCGCCAAGACTTTGATGATATGGCTCTCAGGACTCGATTACTCAGTGAAATGGCTTTGAAGTTGATGAAGCTTGCAAAAAAATTCCGTTTGGCTGTTGTTATGTTCAATCAAGTAACAACCAAGCATATTGAAGGTTCATTTCAATTGACCCTTGCACTAGGAGATAGTTGGTCGCATTCATGCACAAATAGGATAATCTTGTTTTGGAATGGCAACGAACGACACGCATTTATCGACAAGTCCCCTTCTCTGAAATCAGCATCAGCTCCATATTCTGTGACAACTAGAGGGATACGCAATTCTACTTCAAGCTGCAAACGAATCAAGATGATGTGA
Predicted protein sequences of Glyma.03g027600
>Glyma.03g027600.1.p sequence-type=predicted peptide transcript=Glyma.03g027600.1 locus=Glyma.03g027600 ID=Glyma.03g027600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEVGMLPISASKRGKLLAAGYTTLDAIARASPTHLARDIDVSESEATEILNLASKPSALERPNGSHTAVVGGGQTAWDMLNDEKFSSYITTSCADLDNILGGGIKCKEVTEIGGVPGIGKTQIGIQLAVNVQIPQEYGGLGGKAIYIDTEGSFMVERVLQIAEACIEDMAEYSRHFHKDFQACDVKMHPNNILENIFYFRVCSYTEQIALINYLDKFITENKDVKILIVDSVTFHFRQDFDDMALRTRLLSEMALKLMKLAKKFRLAVVMFNQVTTKHIEGSFQLTLALGDSWSHSCTNRIILFWNGNERHAFIDKSPSLKSASAPYSVTTRGIRNSTSSCKRIKMM*

>Glyma.03g027600.2.p sequence-type=predicted peptide transcript=Glyma.03g027600.2 locus=Glyma.03g027600 ID=Glyma.03g027600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEVGMLPISASKRGKLLAAGYTTLDAIARASPTHLARDIDVSESEATEILNLASKPSALERPNGSHTAVVGDLDNILGGGIKCKEVTEIGGVPGIGKTQIGIQLAVNVQIPQEYGGLGGKAIYIDTEGSFMVERVLQIAEACIEDMAEYSRHFHKDFQACDVKMHPNNILENIFYFRVCSYTEQIALINYLDKFITENKDVKILIVDSVTFHFRQDFDDMALRTRLLSEMALKLMKLAKKFRLAVVMFNQVTTKHIEGSFQLTLALGDSWSHSCTNRIILFWNGNERHAFIDKSPSLKSASAPYSVTTRGIRNSTSSCKRIKMM*






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