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Report for Sequence Feature Glyma.03g021900

Feature Type:gene_model
Chromosome:Gm03
Start:2285871
stop:2289619
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g021900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G45480.1AT growth-regulating factor 9 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0032502GO-bp developmental process EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
PF08879PFAM WRC JGI N/AIEA

Expression Patterns of Glyma.03g021900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g021900
ParalogEvidenceComments
Glyma.01g144900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g021900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g02500 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g021900
>Glyma.03g021900.2 sequence-type=transcript locus=Glyma.03g021900 ID=Glyma.03g021900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAAAGTCTTGCAATGTAATAAGCTGTTTGTCAGAAACTTCTGACACCCctttctctctctacccttctctctctcccactctTGCAACTTACAATAGAAGTAAATGGAGGCAACTGCAGAAGCACTTCCGTGCCGAGCTTACCCTTTTCAAATACCCTTTAACATTATTTTTAATATTCACACTGAAAAAAGGTAATAAAAAAAGAAGCTTTTTTTCCTTGAGCATCACAATCGGACACAGACCCTCTTAAGAAAAAGGAAAAAAAAGCCTTATGTGAATGTGACAATGGAAGCTAAGCCTCTTCGAACTGTTCCCTCTTCACACAACACTTCTGGAGGTGGACCCCAGAAGAAGATTGGCATGGAACACAAGATGGAAAGTCGTGTTGTTGATGAGAGGAAGAGGGTTGTTATGGTCAAGGAAGAGAACAGCACTTCTTCTCCCAACAGTGTTGAACTTCATCTCGGGTTTGATGCTTCTCATTCGACTCCACAAGAAATAAACCATGTGATCACTGAAGCTCAGAGGCGTGAGCTTCACCATCAAGTTTTCATCTTCAACCATTTGGCTTATAATCTTCCTCCTCCTTATCACCTTGTGCAATTCCCTAGCAACATGTCAGAATACAGTTTCCTGGGTTTTGATCATGGGATTATGGTGGATCCAGAACCTCATAGGTGTAGAAGAACTGATGGAAAGAAATGGAGGTGTGGTAAGAATGTGGTGCCTAACCAGAAGTACTGTGAAAGGCACATGCACAGAGGTCGAAATCGTTCAAGAAAGCCTGTGGAAACATCTCAAGTTAACTCTCCTTTGGCAACAAAGCCTTGTAGCAAGTCACACACCAAACCATCCTCAAAGACACAATTTGAAATTTCAAGTCCAAACCTTATCGCCATTCCACATATTGACACATCAAGTACCCCATCAAGGAGCCTCAGTGTCACCAATTGCTCTTCTGCTAATAATAGGTCGAAAAATAGGGCAGGTTATGCTGACTACCTCATGTCGTTTTCTTCCGCGTCCACAGTGTCCCCTGGAACCACTCTTGCCACTCCAGTTGCCCCTAAGATAGCTGCCTTCAGCAGTGCGACATCCGTTGTTGCTTCAGATAGCAAAAGTTGCCTAAAGATATGCCAGAAAGATAACCAGTCCAAGAGCTGTATCAGCAACAACATCGGTGTTAAAAGCGGTGGGAAAGGAAGCATTGTTGGTGATACTAATACTAATGGCATCTCTACTGGAATAAGCTTCTCCCCAACGAGTGTTCTTCAAGTTTCAGTTTCTGGTTGCAACCCTTCATACCTGAATGACGGAACCAACATAGAAGCTGCATCCGGTAGGTGCCGGAGAACAGATGGTAAGAAGTGGCAGTGCAAGAGTGCTGTTCTTCCTGGTCAGAAATACTGTGCCACACACATGCATAGAGGTGCCAAAAAGCGTCTCACAAGCCATGAACCAGCAGCTACTGCTACCAGTTCCGCCGTTACCGTTGCGCGGTTGCCTTACTCTTCAGCCACTACCAACATACAGAAAGCGCATTGTGCAATTCCAAACACAAATCTTTCCATGTCAGTCCAAGCCAGGGAAGCATTCATACAATGTAATGAGAAAAGTCAAAGTAGCAGTGACACTGATACTACTATCAGTGACACCTTGAATGAGTATAGCTATGCTTCTTTCTGAGAAGCTCTTTTGTTTTTTGTTTTTTGAAACTTGCATCATGTTTACACGAACAAAAGTAAACAAGTAACTTGTAACATTTGAGGTCAGTTATGTGTGGACTGAACAATGATCTCCATGAAGAAAAGATTAACCACGTGTTTGTTGTTTTTAATCATGTCATCCTCACAATGTGATAAAGTGAAAAAATAATGAACAAATTGGCATTGCTCGGATAACCAACTACAACACCACGACACCACATGGTGTTGCTGTTCCATTTCTTTTTT
Coding sequences of Glyma.03g021900
>Glyma.03g021900.1 sequence-type=CDS polypeptide=Glyma.03g021900.1.p locus=Glyma.03g021900 ID=Glyma.03g021900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCTAAGCCTCTTCGAACTGTTCCCTCTTCACACAACACTTCTGGGGTAGGAGGTGGACCCCAGAAGAAGATTGGCATGGAACACAAGATGGAAAGTCGTGTTGTTGATGAGAGGAAGAGGGTTGTTATGGTCAAGGAAGAGAACAGCACTTCTTCTCCCAACAGTGTTGAACTTCATCTCGGGTTTGATGCTTCTCATTCGACTCCACAAGAAATAAACCATGTGATCACTGAAGCTCAGAGGCGTGAGCTTCACCATCAAGTTTTCATCTTCAACCATTTGGCTTATAATCTTCCTCCTCCTTATCACCTTGTGCAATTCCCTAGCAACATGTCAGAATACAGTTTCCTGGGTTTTGATCATGGGATTATGGTGGATCCAGAACCTCATAGGTGTAGAAGAACTGATGGAAAGAAATGGAGGTGTGGTAAGAATGTGGTGCCTAACCAGAAGTACTGTGAAAGGCACATGCACAGAGGTCGAAATCGTTCAAGAAAGCCTGTGGAAACATCTCAAGTTAACTCTCCTTTGGCAACAAAGCCTTGTAGCAAGTCACACACCAAACCATCCTCAAAGACACAATTTGAAATTTCAAGTCCAAACCTTATCGCCATTCCACATATTGACACATCAAGTACCCCATCAAGGAGCCTCAGTGTCACCAATTGCTCTTCTGCTAATAATAGGTCGAAAAATAGGGCAGGTTATGCTGACTACCTCATGTCGTTTTCTTCCGCGTCCACAGTGTCCCCTGGAACCACTCTTGCCACTCCAGTTGCCCCTAAGATAGCTGCCTTCAGCAGTGCGACATCCGTTGTTGCTTCAGATAGCAAAAGTTGCCTAAAGATATGCCAGAAAGATAACCAGTCCAAGAGCTGTATCAGCAACAACATCGGTGTTAAAAGCGGTGGGAAAGGAAGCATTGTTGGTGATACTAATACTAATGGCATCTCTACTGGAATAAGCTTCTCCCCAACGAGTGTTCTTCAAGTTTCAGTTTCTGGTTGCAACCCTTCATACCTGAATGACGGAACCAACATAGAAGCTGCATCCGGTAGGTGCCGGAGAACAGATGGTAAGAAGTGGCAGTGCAAGAGTGCTGTTCTTCCTGGTCAGAAATACTGTGCCACACACATGCATAGAGGTGCCAAAAAGCGTCTCACAAGCCATGAACCAGCAGCTACTGCTACCAGTTCCGCCGTTACCGTTGCGCGGTTGCCTTACTCTTCAGCCACTACCAACATACAGAAAGCGCATTGTGCAATTCCAAACACAAATCTTTCCATGTCAGTCCAAGCCAGGGAAGCATTCATACAATGTAATGAGAAAAGTCAAAGTAGCAGTGACACTGATACTACTATCAGTGACACCTTGAATGAGTATAGCTATGCTTCTTTCTGA

>Glyma.03g021900.2 sequence-type=CDS polypeptide=Glyma.03g021900.2.p locus=Glyma.03g021900 ID=Glyma.03g021900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCTAAGCCTCTTCGAACTGTTCCCTCTTCACACAACACTTCTGGAGGTGGACCCCAGAAGAAGATTGGCATGGAACACAAGATGGAAAGTCGTGTTGTTGATGAGAGGAAGAGGGTTGTTATGGTCAAGGAAGAGAACAGCACTTCTTCTCCCAACAGTGTTGAACTTCATCTCGGGTTTGATGCTTCTCATTCGACTCCACAAGAAATAAACCATGTGATCACTGAAGCTCAGAGGCGTGAGCTTCACCATCAAGTTTTCATCTTCAACCATTTGGCTTATAATCTTCCTCCTCCTTATCACCTTGTGCAATTCCCTAGCAACATGTCAGAATACAGTTTCCTGGGTTTTGATCATGGGATTATGGTGGATCCAGAACCTCATAGGTGTAGAAGAACTGATGGAAAGAAATGGAGGTGTGGTAAGAATGTGGTGCCTAACCAGAAGTACTGTGAAAGGCACATGCACAGAGGTCGAAATCGTTCAAGAAAGCCTGTGGAAACATCTCAAGTTAACTCTCCTTTGGCAACAAAGCCTTGTAGCAAGTCACACACCAAACCATCCTCAAAGACACAATTTGAAATTTCAAGTCCAAACCTTATCGCCATTCCACATATTGACACATCAAGTACCCCATCAAGGAGCCTCAGTGTCACCAATTGCTCTTCTGCTAATAATAGGTCGAAAAATAGGGCAGGTTATGCTGACTACCTCATGTCGTTTTCTTCCGCGTCCACAGTGTCCCCTGGAACCACTCTTGCCACTCCAGTTGCCCCTAAGATAGCTGCCTTCAGCAGTGCGACATCCGTTGTTGCTTCAGATAGCAAAAGTTGCCTAAAGATATGCCAGAAAGATAACCAGTCCAAGAGCTGTATCAGCAACAACATCGGTGTTAAAAGCGGTGGGAAAGGAAGCATTGTTGGTGATACTAATACTAATGGCATCTCTACTGGAATAAGCTTCTCCCCAACGAGTGTTCTTCAAGTTTCAGTTTCTGGTTGCAACCCTTCATACCTGAATGACGGAACCAACATAGAAGCTGCATCCGGTAGGTGCCGGAGAACAGATGGTAAGAAGTGGCAGTGCAAGAGTGCTGTTCTTCCTGGTCAGAAATACTGTGCCACACACATGCATAGAGGTGCCAAAAAGCGTCTCACAAGCCATGAACCAGCAGCTACTGCTACCAGTTCCGCCGTTACCGTTGCGCGGTTGCCTTACTCTTCAGCCACTACCAACATACAGAAAGCGCATTGTGCAATTCCAAACACAAATCTTTCCATGTCAGTCCAAGCCAGGGAAGCATTCATACAATGTAATGAGAAAAGTCAAAGTAGCAGTGACACTGATACTACTATCAGTGACACCTTGAATGAGTATAGCTATGCTTCTTTCTGA
Predicted protein sequences of Glyma.03g021900
>Glyma.03g021900.1.p sequence-type=predicted peptide transcript=Glyma.03g021900.1 locus=Glyma.03g021900 ID=Glyma.03g021900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEAKPLRTVPSSHNTSGVGGGPQKKIGMEHKMESRVVDERKRVVMVKEENSTSSPNSVELHLGFDASHSTPQEINHVITEAQRRELHHQVFIFNHLAYNLPPPYHLVQFPSNMSEYSFLGFDHGIMVDPEPHRCRRTDGKKWRCGKNVVPNQKYCERHMHRGRNRSRKPVETSQVNSPLATKPCSKSHTKPSSKTQFEISSPNLIAIPHIDTSSTPSRSLSVTNCSSANNRSKNRAGYADYLMSFSSASTVSPGTTLATPVAPKIAAFSSATSVVASDSKSCLKICQKDNQSKSCISNNIGVKSGGKGSIVGDTNTNGISTGISFSPTSVLQVSVSGCNPSYLNDGTNIEAASGRCRRTDGKKWQCKSAVLPGQKYCATHMHRGAKKRLTSHEPAATATSSAVTVARLPYSSATTNIQKAHCAIPNTNLSMSVQAREAFIQCNEKSQSSSDTDTTISDTLNEYSYASF*

>Glyma.03g021900.2.p sequence-type=predicted peptide transcript=Glyma.03g021900.2 locus=Glyma.03g021900 ID=Glyma.03g021900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEAKPLRTVPSSHNTSGGGPQKKIGMEHKMESRVVDERKRVVMVKEENSTSSPNSVELHLGFDASHSTPQEINHVITEAQRRELHHQVFIFNHLAYNLPPPYHLVQFPSNMSEYSFLGFDHGIMVDPEPHRCRRTDGKKWRCGKNVVPNQKYCERHMHRGRNRSRKPVETSQVNSPLATKPCSKSHTKPSSKTQFEISSPNLIAIPHIDTSSTPSRSLSVTNCSSANNRSKNRAGYADYLMSFSSASTVSPGTTLATPVAPKIAAFSSATSVVASDSKSCLKICQKDNQSKSCISNNIGVKSGGKGSIVGDTNTNGISTGISFSPTSVLQVSVSGCNPSYLNDGTNIEAASGRCRRTDGKKWQCKSAVLPGQKYCATHMHRGAKKRLTSHEPAATATSSAVTVARLPYSSATTNIQKAHCAIPNTNLSMSVQAREAFIQCNEKSQSSSDTDTTISDTLNEYSYASF*






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