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Report for Sequence Feature Glyma.03g019800

Feature Type:gene_model
Chromosome:Gm03
Start:2042924
stop:2045722
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g019800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G51810.1AT gibberellin 20 oxidase 2 JGI N/AIEA
GO:0009416GO-bp response to light stimulus EnsemblGenomesN/AIEA
GO:0009686GO-bp gibberellin biosynthetic process EnsemblGenomesN/AIEA
GO:0009740GO-bp gibberellic acid mediated signaling pathway EnsemblGenomesN/AIEA
GO:0009826GO-bp unidimensional cell growth EnsemblGenomesN/AIEA
GO:0009908GO-bp flower development EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016706GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors JGI N/AIEA
GO:0045544GO-mf gibberellin 20-oxidase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0143 KOG Iron/ascorbate family oxidoreductases JGI N/AIEA
PTHR10209Panther OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN JGI N/AIEA
PTHR10209:SF55Panther JGI N/AIEA
PF03171PFAM 2OG-Fe(II) oxygenase superfamily JGI N/AIEA
PWY-5035SoyCyc9 gibberellin biosynthesis III (early C-13 hydroxylation) Plant Metabolic Network ISS
PWY-5070SoyCyc9 gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) Plant Metabolic Network ISS
GN7V-55435SoyCyc9-rxn gibberellin-44 dioxygenase Plant Metabolic Network ISS

Proteins Associated with Glyma.03g019800
LocusGene SymbolProtein Name
GA20OX1 gibberellin 20 oxidase 1

Expression Patterns of Glyma.03g019800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g019800
ParalogEvidenceComments
Glyma.07g081700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g019800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g02260 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g019800
>Glyma.03g019800.2 sequence-type=transcript locus=Glyma.03g019800 ID=Glyma.03g019800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAAAACAAACTAATGATAAGATTCTCTAATGTCTGTTCCCCGACTTCCCCAATGAATCCTCTCTTGGCCTATCTCAATACTCTATTTCACCAACTTTATTATTAACCTCTTCCTTTGTCTAATTCCCCATTCATTCATTCATTGTTCACACTCTTTTGACctctccttttctctctctctctctctctcCACACACACTAAGCTGGTTTTGTGAACTTCATCAAATTAAACTAAAACATGCTAGTTCCTCATCATCCTTCAATGCTAATTGCACCTCAAAACACATCCGCAGAAAATCATGACAACATGGAAGGACAGAAACAACTACACCACTTTGATGAATCTTTGATGCCAAACCAGTCCAACATACCCTCCCAGTTCATATGGCCTGATCATGAAAAACCATGCTTAACACCACCAGAACTCCATATTCCACCCATTGACTTGAAGGCTTTTCTCTCAGGAGATCCACAAGCTGTGTCAGCAATTTGTGCAGAAGCCAATGAGCTGTCACAGAAGCAGAAGGCTCAGAGAAAGATTGGAGAACATTGTGGCTATGCTAATAGCTTCATTGGAAGATTCTCCTCCAAACTTCCTTGGAAGGAAACACTTTCTTTCCATTATTCTGCTGATAAATCCAGCAAAAGTGTGGAGGATTATTTCCTAAATGTCATGGGGGAGGATTTCAGGAAATTTGGGAGTGTGTTCCAAGAATACTGTGAAGCCATGAGCAAACTCTCTCTTGGGATCATGGAGCTTCTGGGGATGACCCTAGGAGTTGGCAGGGAATGTTTCAGAGATTTCTTCGAAGGAAATGAGTCGGTTATGAGGTTGAATTACTACCCACCATGCCAAAAACCTGAGTTAGCTTTAGGAACAGGACCTCATTGTGACCCTACATCCCTAACCATTCTCCACCAAGATCAAGTCGAGGGCCTCCAAGTCTTCGTTGATGGAAGATGGTACTCTGTCGCTCCTAAAGAAGATGCTTTCGTTGTCAATATTGGCGATACATTTATGGCTCTATCGAATGGGTTGTTCAAGAGTTGCATGCATAGAGCAGTTGTAAACAACAAAATTGTGAGAAAATCACTTGCTTTCTTCCTATGTCCAAATAGAGACAAAGTGGTCACCCCTCCAAAAGATCTAATCAGCAACGAGAATCCAAGAACATACCCAGATTTCACATGGCCAAGCCTTCTTGAATTCACACAGAAACACTACAGGTCTGACACAGAAACACTTGATGCTTTCTCGAGGTGGCTACTAGAGAAAAACAACTGAACAAGGGTGCCCCCACACAATTGCTCCATGGCCAACAAAAACTATAAAACTAGCTTTAGCTTGTATTTGCTTGAGTGAGGAAGATATGACATCATATTAAAGTGAAAAAAGAGGGTGCTTTTGGTGGTTCGACTTGTGaagaaaaagataacagaaacatcaaaagagaaagGCTAATCAGTAATTAGTTGTGGTGTTAGTGTTGGGAGAATCCTATATGGTGCAAATGGAAGAAGAACTGAGGCCATATTCTTAGGAATAAAGAGACTTGATTTGTGTAGTGAAGTTATTCGATGTTGTCACTACTAATGCATTATTAGTTGTCTTGAACTCTATTGTAGTTATGTGTTGTTATGCATATTTTTAGAACTTTTAATTAATTAATAATACACTGCGCTGTATTTTGTGTCATCTG
Coding sequences of Glyma.03g019800
>Glyma.03g019800.1 sequence-type=CDS polypeptide=Glyma.03g019800.1.p locus=Glyma.03g019800 ID=Glyma.03g019800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTAGTTCCTCATCATCCTTCAATGCTAATTGCACCTCAAAACACATCCGCAGAAAATCATGACAACATGGAAGGACAGAAACAACTACACCACTTTGATGAATCTTTGATGCCAAACCAGTCCAACATACCCTCCCAGTTCATATGGCCTGATCATGAAAAACCATGCTTAACACCACCAGAACTCCATATTCCACCCATTGACTTGAAGGCTTTTCTCTCAGGAGATCCACAAGCTGTGTCAGCAATTTGTGCAGAAGCCAATGAGGCATGCAAGAAGCATGGCTTCTTCCTTGTTGTCAACCATGGTGTTGATAGAAAGCTCATAGCTCAAGCTCATAAGCTCATAGATGATTTCTTCTGCATGCAGCTGTCACAGAAGCAGAAGGCTCAGAGAAAGATTGGAGAACATTGTGGCTATGCTAATAGCTTCATTGGAAGATTCTCCTCCAAACTTCCTTGGAAGGAAACACTTTCTTTCCATTATTCTGCTGATAAATCCAGCAAAAGTGTGGAGGATTATTTCCTAAATGTCATGGGGGAGGATTTCAGGAAATTTGGGAGTGTGTTCCAAGAATACTGTGAAGCCATGAGCAAACTCTCTCTTGGGATCATGGAGCTTCTGGGGATGACCCTAGGAGTTGGCAGGGAATGTTTCAGAGATTTCTTCGAAGGAAATGAGTCGGTTATGAGGTTGAATTACTACCCACCATGCCAAAAACCTGAGTTAGCTTTAGGAACAGGACCTCATTGTGACCCTACATCCCTAACCATTCTCCACCAAGATCAAGTCGAGGGCCTCCAAGTCTTCGTTGATGGAAGATGGTACTCTGTCGCTCCTAAAGAAGATGCTTTCGTTGTCAATATTGGCGATACATTTATGGCTCTATCGAATGGGTTGTTCAAGAGTTGCATGCATAGAGCAGTTGTAAACAACAAAATTGTGAGAAAATCACTTGCTTTCTTCCTATGTCCAAATAGAGACAAAGTGGTCACCCCTCCAAAAGATCTAATCAGCAACGAGAATCCAAGAACATACCCAGATTTCACATGGCCAAGCCTTCTTGAATTCACACAGAAACACTACAGGTCTGACACAGAAACACTTGATGCTTTCTCGAGGTGGCTACTAGAGAAAAACAACTGA

>Glyma.03g019800.2 sequence-type=CDS polypeptide=Glyma.03g019800.2.p locus=Glyma.03g019800 ID=Glyma.03g019800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTAGTTCCTCATCATCCTTCAATGCTAATTGCACCTCAAAACACATCCGCAGAAAATCATGACAACATGGAAGGACAGAAACAACTACACCACTTTGATGAATCTTTGATGCCAAACCAGTCCAACATACCCTCCCAGTTCATATGGCCTGATCATGAAAAACCATGCTTAACACCACCAGAACTCCATATTCCACCCATTGACTTGAAGGCTTTTCTCTCAGGAGATCCACAAGCTGTGTCAGCAATTTGTGCAGAAGCCAATGAGCTGTCACAGAAGCAGAAGGCTCAGAGAAAGATTGGAGAACATTGTGGCTATGCTAATAGCTTCATTGGAAGATTCTCCTCCAAACTTCCTTGGAAGGAAACACTTTCTTTCCATTATTCTGCTGATAAATCCAGCAAAAGTGTGGAGGATTATTTCCTAAATGTCATGGGGGAGGATTTCAGGAAATTTGGGAGTGTGTTCCAAGAATACTGTGAAGCCATGAGCAAACTCTCTCTTGGGATCATGGAGCTTCTGGGGATGACCCTAGGAGTTGGCAGGGAATGTTTCAGAGATTTCTTCGAAGGAAATGAGTCGGTTATGAGGTTGAATTACTACCCACCATGCCAAAAACCTGAGTTAGCTTTAGGAACAGGACCTCATTGTGACCCTACATCCCTAACCATTCTCCACCAAGATCAAGTCGAGGGCCTCCAAGTCTTCGTTGATGGAAGATGGTACTCTGTCGCTCCTAAAGAAGATGCTTTCGTTGTCAATATTGGCGATACATTTATGGCTCTATCGAATGGGTTGTTCAAGAGTTGCATGCATAGAGCAGTTGTAAACAACAAAATTGTGAGAAAATCACTTGCTTTCTTCCTATGTCCAAATAGAGACAAAGTGGTCACCCCTCCAAAAGATCTAATCAGCAACGAGAATCCAAGAACATACCCAGATTTCACATGGCCAAGCCTTCTTGAATTCACACAGAAACACTACAGGTCTGACACAGAAACACTTGATGCTTTCTCGAGGTGGCTACTAGAGAAAAACAACTGA
Predicted protein sequences of Glyma.03g019800
>Glyma.03g019800.1.p sequence-type=predicted peptide transcript=Glyma.03g019800.1 locus=Glyma.03g019800 ID=Glyma.03g019800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLVPHHPSMLIAPQNTSAENHDNMEGQKQLHHFDESLMPNQSNIPSQFIWPDHEKPCLTPPELHIPPIDLKAFLSGDPQAVSAICAEANEACKKHGFFLVVNHGVDRKLIAQAHKLIDDFFCMQLSQKQKAQRKIGEHCGYANSFIGRFSSKLPWKETLSFHYSADKSSKSVEDYFLNVMGEDFRKFGSVFQEYCEAMSKLSLGIMELLGMTLGVGRECFRDFFEGNESVMRLNYYPPCQKPELALGTGPHCDPTSLTILHQDQVEGLQVFVDGRWYSVAPKEDAFVVNIGDTFMALSNGLFKSCMHRAVVNNKIVRKSLAFFLCPNRDKVVTPPKDLISNENPRTYPDFTWPSLLEFTQKHYRSDTETLDAFSRWLLEKNN*

>Glyma.03g019800.2.p sequence-type=predicted peptide transcript=Glyma.03g019800.2 locus=Glyma.03g019800 ID=Glyma.03g019800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLVPHHPSMLIAPQNTSAENHDNMEGQKQLHHFDESLMPNQSNIPSQFIWPDHEKPCLTPPELHIPPIDLKAFLSGDPQAVSAICAEANELSQKQKAQRKIGEHCGYANSFIGRFSSKLPWKETLSFHYSADKSSKSVEDYFLNVMGEDFRKFGSVFQEYCEAMSKLSLGIMELLGMTLGVGRECFRDFFEGNESVMRLNYYPPCQKPELALGTGPHCDPTSLTILHQDQVEGLQVFVDGRWYSVAPKEDAFVVNIGDTFMALSNGLFKSCMHRAVVNNKIVRKSLAFFLCPNRDKVVTPPKDLISNENPRTYPDFTWPSLLEFTQKHYRSDTETLDAFSRWLLEKNN*






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