Glyma.03g017200

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Report for Sequence Feature Glyma.03g017200

Feature Type:	gene_model
Chromosome:	Gm03
Start:	1735158
stop:	1738810
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.03g017200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25500.1	AT	arginine/serine-rich splicing factor 35	JGI	N/A	IEA
AT5G52040.2	AT	RNA-binding (RRM/RBD/RNP motifs) family protein	JGI	N/A	IEA
GO:0000398	GO-bp	mRNA splicing, via spliceosome	EnsemblGenomes	N/A	IEA
GO:0005681	GO-cc	spliceosomal complex	EnsemblGenomes	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	EnsemblGenomes	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	JGI	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
KOG0106	KOG	Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)	JGI	N/A	IEA
PTHR10548	Panther	SPLICING FACTOR, ARGININE/SERINE-RICH	JGI	N/A	IEA
PTHR10548:SF23	Panther		JGI	N/A	IEA
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI	N/A	IEA

Expression Patterns of Glyma.03g017200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g017200 not represented in the dataset	Glyma.03g017200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.03g017200

Paralog	Evidence	Comments
Glyma.07g078300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g017200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma03g01920	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.03g017200

Limit To All Plant Sequences

>Glyma.03g017200.2 sequence-type=transcript locus=Glyma.03g017200 ID=Glyma.03g017200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCTTTCTTTCTCTCTCCACTTTCCAACATTCGCTTTCTTTCTCTCGCGTTTCGCAATTTCCCCAAATCTCACGCCTAGGGTTTCTATCGCAAACCCTCACTCCCTTCATTAAGGTCGCGCGCGAAGGGATTTCGAAGCTTCGGAAGGAAAAAAAAAAAGATGAAACCTGTTTTCTGCGGAAACCTGGATTTCGACGCGCGTCAATCCGACGTGGAGAGGCTCTTCAGAAGATACGGCAAGGTTGATAGAGTCGACATGAAATCCGGATTACTTGGAAAGTTGGAATGTCCATGCTCTTCTTGGATGGATGTGCTTCTCTGCATTTCTTTTCTAGAATGTGCCCCAGCTTCTCCTTCTTGTATTTTTCCAGAAGAAATAATCTGATTCGCCCTAGCCCTGCCATTCTGCATTCCCTCAGCATTCATTGCTTTTTCATTCCTCATGACTTTTGCTCAGTGTTCAATTTCCAACATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGGTTTGCTTTCGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGTCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAGACCATCCAAAACTTTGTTTGTTATAAATTTTGATCCCGTTAATGCCAGGACAAGGGATCTGGAGAGACATTTTGATTCCTATGGGAAAATATTAAATATAAGAATCAGAAGGAATTTTGCTTTTATTCAGTTTGAATCCCAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACTGTGGAGTATGCCATAAGAGATGATGATGACAGAGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGCCATGACTCTCCTGATGGGAGATATGGTCGTGGTAGATCCCCCAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCGAATCCATCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGATCGAGCTGAAAGCCCAATAAATGGGAGATATGATAGCCGGTCTCCCCCACCCCGAGATAGGTCTCGATCTTGAGGAAAAGCTGAATAGAACTGTGTGAAATTGTTGTTAGACCATTTTAATTTCATTTTAGTCCATAGTTTGGCAGCAAAAACTCAAACTtgttattgtatttactgttatgctatgtttggttaGAACCTTAATGTGCAAATGACACTATATTAGATGGTATTATGCTGCTCATCAAATTTTATGGTTTTTATTTTGCTAAATATTTTTTTTTGTTTACCATACTTTAAACCGAAGGTAAGCCTGATCCT

>Glyma.03g017200.3 sequence-type=transcript locus=Glyma.03g017200 ID=Glyma.03g017200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGAATGGATGTACATTTTCTTTCCCTCTTTAAGAAAGAAAGCTGTCTTTAGATATGAACCCCCATACTCAATAATTTCTTTGTGGCAGGATTACTTGGAAAGTTGGAATGTCCATGCTCTTCTTGGATGGATGTGCTTCTCTGCATTTCTTTTCTAGAATGTGCCCCAGCTTCTCCTTCTTGTATTTTTCCAGAAGAAATAATCTGATTCGCCCTAGCCCTGCCATTCTGCATTCCCTCAGCATTCATTGCTTTTTCATTCCTCATGACTTTTGCTCAGTGTTCAATTTCCAACATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGGTTTGCTTTCGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGTCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAGACCATCCAAAACTTTGTTTGTTATAAATTTTGATCCCGTTAATGCCAGGACAAGGGATCTGGAGAGACATTTTGATTCCTATGGGAAAATATTAAATATAAGAATCAGAAGGAATTTTGCTTTTATTCAGTTTGAATCCCAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACTGTGGAGTATGCCATAAGAGATGATGATGACAGAGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGCCATGACTCTCCTGATGGGAGATATGGTCGTGGTAGATCCCCCAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCGAATCCATCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGATCGAGCTGAAAGCCCAATAAATGGGAGATATGATAGCCGGTCTCCCCCACCCCGAGATAGGTCTCGATCTTGAGGAAAAGCTGAATAGAACTGTGTGAAATTGTTGTTAGACCATTTTAATTTCATTTTAGTCCATAGTTTGGCAGCAAAAACTCAAACTtgttattgtatttactgttatgctatgtttggttaGAACCTTAATGTGCAAATGACACTATATTAGATGGTATTATGCTGCTCATCAAATTTTATGGTTTTTATTTTGCTAAATATTTTTTTTTGTTTACCATACTTTAAACCGAAGGTAAGCCTGATCCT

>Glyma.03g017200.4 sequence-type=transcript locus=Glyma.03g017200 ID=Glyma.03g017200.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACTTAAATATTTATGTGCTGTTTTATGCATAACATTTTTGTTTCATAGGGTTTGCTTTCGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGTCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAGACCATCCAAAACTTTGTTTGTTATAAATTTTGATCCCGTTAATGCCAGGACAAGGGATCTGGAGAGACATTTTGATTCCTATGGGAAAATATTAAATATAAGAATCAGAAGGAATTTTGCTTTTATTCAGTTTGAATCCCAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACTGTGGAGTATGCCATAAGAGATGATGATGACAGAGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGCCATGACTCTCCTGATGGGAGATATGGTCGTGGTAGATCCCCCAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCGAATCCATCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGATCGAGCTGAAAGCCCAATAAATGGGAGATATGATAGCCGGTCTCCCCCACCCCGAGATAGGTCTCGATCTTGAGGAAAAGCTGAATAGAACTGTGTGAAATTGTTGTTAGACCATTTTAATTTCATTTTAGTCCATAGTTTGGCAGCAAAAACTCAAACTtgttattgtatttactgttatgctatgtttggttaGAACCTTAATGTGCAAATGACACTATATTAGATGGTATTATGCTGCTCATCAAATTTTATGGTTTTTATTTTGCTAAATATTTTTTTTTGTTTACCATACTTTAAACCGAAGGTAAGCCTGATCCT

Coding sequences of Glyma.03g017200

Limit To All Plant Sequences

>Glyma.03g017200.1 sequence-type=CDS polypeptide=Glyma.03g017200.1.p locus=Glyma.03g017200 ID=Glyma.03g017200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAACCTGTTTTCTGCGGAAACCTGGATTTCGACGCGCGTCAATCCGACGTGGAGAGGCTCTTCAGAAGATACGGCAAGGTTGATAGAGTCGACATGAAATCCGGGTTTGCTTTCGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGTCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAGACCATCCAAAACTTTGTTTGTTATAAATTTTGATCCCGTTAATGCCAGGACAAGGGATCTGGAGAGACATTTTGATTCCTATGGGAAAATATTAAATATAAGAATCAGAAGGAATTTTGCTTTTATTCAGTTTGAATCCCAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACTGTGGAGTATGCCATAAGAGATGATGATGACAGAGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGCCATGACTCTCCTGATGGGAGATATGGTCGTGGTAGATCCCCCAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCGAATCCATCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGATCGAGCTGAAAGCCCAATAAATGGGAGATATGATAGCCGGTCTCCCCCACCCCGAGATAGGTCTCGATCTTGA

>Glyma.03g017200.2 sequence-type=CDS polypeptide=Glyma.03g017200.2.p locus=Glyma.03g017200 ID=Glyma.03g017200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTTTTGCTCAGTGTTCAATTTCCAACATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGGTTTGCTTTCGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGTCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAGACCATCCAAAACTTTGTTTGTTATAAATTTTGATCCCGTTAATGCCAGGACAAGGGATCTGGAGAGACATTTTGATTCCTATGGGAAAATATTAAATATAAGAATCAGAAGGAATTTTGCTTTTATTCAGTTTGAATCCCAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACTGTGGAGTATGCCATAAGAGATGATGATGACAGAGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGCCATGACTCTCCTGATGGGAGATATGGTCGTGGTAGATCCCCCAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCGAATCCATCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGATCGAGCTGAAAGCCCAATAAATGGGAGATATGATAGCCGGTCTCCCCCACCCCGAGATAGGTCTCGATCTTGA

>Glyma.03g017200.3 sequence-type=CDS polypeptide=Glyma.03g017200.3.p locus=Glyma.03g017200 ID=Glyma.03g017200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTTTTGCTCAGTGTTCAATTTCCAACATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGGTTTGCTTTCGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGTCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAGACCATCCAAAACTTTGTTTGTTATAAATTTTGATCCCGTTAATGCCAGGACAAGGGATCTGGAGAGACATTTTGATTCCTATGGGAAAATATTAAATATAAGAATCAGAAGGAATTTTGCTTTTATTCAGTTTGAATCCCAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACTGTGGAGTATGCCATAAGAGATGATGATGACAGAGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGCCATGACTCTCCTGATGGGAGATATGGTCGTGGTAGATCCCCCAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCGAATCCATCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGATCGAGCTGAAAGCCCAATAAATGGGAGATATGATAGCCGGTCTCCCCCACCCCGAGATAGGTCTCGATCTTGA

>Glyma.03g017200.4 sequence-type=CDS polypeptide=Glyma.03g017200.4.p locus=Glyma.03g017200 ID=Glyma.03g017200.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGTCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAGACCATCCAAAACTTTGTTTGTTATAAATTTTGATCCCGTTAATGCCAGGACAAGGGATCTGGAGAGACATTTTGATTCCTATGGGAAAATATTAAATATAAGAATCAGAAGGAATTTTGCTTTTATTCAGTTTGAATCCCAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACTGTGGAGTATGCCATAAGAGATGATGATGACAGAGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGCCATGACTCTCCTGATGGGAGATATGGTCGTGGTAGATCCCCCAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCGAATCCATCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGATCGAGCTGAAAGCCCAATAAATGGGAGATATGATAGCCGGTCTCCCCCACCCCGAGATAGGTCTCGATCTTGA

Predicted protein sequences of Glyma.03g017200

Limit To All Plant Sequences

>Glyma.03g017200.1.p sequence-type=predicted peptide transcript=Glyma.03g017200.1 locus=Glyma.03g017200 ID=Glyma.03g017200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVNARTRDLERHFDSYGKILNIRIRRNFAFIQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPEPRGSPKYDRAESPINGRYDSRSPPPRDRSRS*

>Glyma.03g017200.2.p sequence-type=predicted peptide transcript=Glyma.03g017200.2 locus=Glyma.03g017200 ID=Glyma.03g017200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTFAQCSISNMFQHRNHDDFATVAGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVNARTRDLERHFDSYGKILNIRIRRNFAFIQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPEPRGSPKYDRAESPINGRYDSRSPPPRDRSRS*

>Glyma.03g017200.3.p sequence-type=predicted peptide transcript=Glyma.03g017200.3 locus=Glyma.03g017200 ID=Glyma.03g017200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTFAQCSISNMFQHRNHDDFATVAGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVNARTRDLERHFDSYGKILNIRIRRNFAFIQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPEPRGSPKYDRAESPINGRYDSRSPPPRDRSRS*

>Glyma.03g017200.4.p sequence-type=predicted peptide transcript=Glyma.03g017200.4 locus=Glyma.03g017200 ID=Glyma.03g017200.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVNARTRDLERHFDSYGKILNIRIRRNFAFIQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPEPRGSPKYDRAESPINGRYDSRSPPPRDRSRS*

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