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Report for Sequence Feature Glyma.03g007300

Feature Type:gene_model
Chromosome:Gm03
Start:657543
stop:660955
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g007300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G03240.1AT frataxin homolog JGI N/AIEA
GO:0006879GO-bp cellular iron ion homeostasis EnsemblGenomesN/AIEA
GO:0007005GO-bp mitochondrion organization EnsemblGenomesN/AIEA
GO:0016226GO-bp iron-sulfur cluster assembly EnsemblGenomesN/AIEA
GO:0016226GO-bp iron-sulfur cluster assembly JGI N/AIEA
GO:0018283GO-bp iron incorporation into metallo-sulfur cluster EnsemblGenomesN/AIEA
GO:0034599GO-bp cellular response to oxidative stress EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0004322GO-mf ferroxidase activity EnsemblGenomesN/AIEA
GO:0008198GO-mf ferrous iron binding EnsemblGenomesN/AIEA
GO:0008199GO-mf ferric iron binding EnsemblGenomesN/AIEA
GO:0008199GO-mf ferric iron binding JGI N/AIEA
GO:0034986GO-mf iron chaperone activity EnsemblGenomesN/AIEA
GO:0051537GO-mf 2 iron, 2 sulfur cluster binding EnsemblGenomesN/AIEA
PTHR16821Panther FRATAXIN JGI N/AIEA
PF01491PFAM Frataxin-like domain JGI N/AIEA
GN7V-64348SoyCyc9-rxn ferroxidase Plant Metabolic Network ISS

Expression Patterns of Glyma.03g007300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g007300
ParalogEvidenceComments
Glyma.19g118800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g007300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g00960 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g007300
>Glyma.03g007300.1 sequence-type=CDS polypeptide=Glyma.03g007300.1.p locus=Glyma.03g007300 ID=Glyma.03g007300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCAAAGCTGCTTTTGCAGAGAAGGCTCTTTAGGTTTCTGCAACTGTCACCACCTTTTTTTTCTTCCATTCATGCAGCCCCAACAATCCTTTCTGCAAAAGCTTCAGAATTCATGTTTCTCTACAATGTGAATGCCCTTCTTCCTCCTCTCTCTCCTTCTAGAAACTTCTGCTCTCGCAGTTTTAACCTTCATGAATCTCAAGGCCCCCTGACTATTGATTACAGTTCTCTACTGCAGGAGGGTGAATTCCACAGACTGGCTGATTCCACAATACATAGCCTACAAGAGAAATTAGAGGACTATGGAGACTCAGTTGAAGTTGATGGATTTGACATAGATTATGGGAATGATGTTTTGACTATAAAACTTGGCGATCTTGGCACCTATGTGTTGAATAAACAAACACCAAATAGACAACTTTGGCTGTCTTCTCCTATGAGTGGTCCGTCAAGGTTTGATTGGGATCGGGATACAAAAGCTTGGATTTATAGGCGGAACAAAGCAAACTTGTATAAAATTTTGGAAGGGGAGTTGGAGCAGTTATGTGGCAAACCTATTGTTCTTTCTTAA
Predicted protein sequences of Glyma.03g007300
>Glyma.03g007300.1.p sequence-type=predicted peptide transcript=Glyma.03g007300.1 locus=Glyma.03g007300 ID=Glyma.03g007300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASKLLLQRRLFRFLQLSPPFFSSIHAAPTILSAKASEFMFLYNVNALLPPLSPSRNFCSRSFNLHESQGPLTIDYSSLLQEGEFHRLADSTIHSLQEKLEDYGDSVEVDGFDIDYGNDVLTIKLGDLGTYVLNKQTPNRQLWLSSPMSGPSRFDWDRDTKAWIYRRNKANLYKILEGELEQLCGKPIVLS*






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