Glyma.03g004200

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Report for Sequence Feature Glyma.03g004200

Feature Type:	gene_model
Chromosome:	Gm03
Start:	370538
stop:	374055
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.03g004200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05080.1	AT	ubiquitin-conjugating enzyme 22	JGI	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
GO:0016881	GO-mf	acid-amino acid ligase activity	JGI	N/A	IEA
KOG0423	KOG	Ubiquitin-protein ligase	JGI	N/A	IEA
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI	N/A	IEA
PTHR24067:SF24	Panther		JGI	N/A	IEA
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI	N/A	IEA

Expression Patterns of Glyma.03g004200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g004200 not represented in the dataset	Glyma.03g004200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.03g004200

Paralog	Evidence	Comments
Glyma.19g121700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g004200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma03g00650	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.03g004200

Limit To All Plant Sequences

>Glyma.03g004200.2 sequence-type=transcript locus=Glyma.03g004200 ID=Glyma.03g004200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
aattTCTGTGCCTCAAAGTTCCACCAATCAATCGTTCATTCATTCCAAGGAGGGAtctctctctctctctctttctctcctctcACACCCCCAAAAGCTTCTTCTGTTCCGTGCAGGCAATTTTTCTTTGGTTTGGTTGCATCTTTTGATCTGATCAACAAGTTTGAGAATTCAGTTTGGGAAAGGCCATTCCTCTTTAGTACAAAACAGATTGAGGGTGCCTTTGTGCTGATGGCCACTAATGAAAATCTTCCACCAAATGTAATTAAGCAACTTGCCAAGGAGTTGAAAAGTCTTGATGAATCCCCTCCTGAGGGCATTAAGGTTGTGGTAAATGATGATGATTTTTCGACAATATTTTCTGACATTGAAGGCCCAGGTAAGTAGCTTTTATGTTTTTTGTTGTATGATTGAGCACTCGCATTTGGTAAGGAGCTCAAACTAACTGCAGTACTATAATTTTGCAGCTGGAACTCCTTATGAGAATGGAGTTTTCCGAATGAAGCTGTTGCTGTCTCATGATTTCCCGCATTCTCCACCTAAAGGTTTTTTCTTGACTAAGATTTTCCATCCAAACATTGCAAACAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTTCCTGAATCAGCTCTAAATGAACAGGCTGGCAAAATGCTGCTTGAAAATTATGAGGAGTATGCTAGACATGCTAGGCTTTACACCGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGCGGAGCTATATCTGAATCAACAACTGCTCTGAATGTGGATCAGACAAACACCTCTGTGATTAGTGCTGACATCAAAACCACACCGGCGAGTGCTGCATTGCCAGCAGCCACCGCAACAAGAGGAAATAATCAGGAACAGGCAGCAGCGGCTGTTAATGGTTCTAATGCTGCCGCTACAGTCATTTCTGCTGCTGCTTCTGCACCCCAAAAGAAGGAAGGTGGACAAGCAAAAGCTCAGGTGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAATAAAATTGTTCAATTATTGATGTTTTTTTTAATTGTGTCTTAGTTTTACAATTTGATAGAGAAAGAGGAAGGAGTGGAGATATGGTCTCCTGGGTTCAACATTTGTTTTATATAATGAATTAGTAATTTCTTGTTAGGAGTAAATGGATGAAATTGAACTTGTTGTCTTTGGACTTGTGTTATACTCTTTGGTAAAATATTGATCTTTTAGGGAAAGAATGCTCTATAAGTAGCGGTAGACTTAAGTTAGGTTATTTTTGGATTCAACTCATTTATGAAAATGGGATTAAAAATTTTCTTTTGAATTCCAA

>Glyma.03g004200.3 sequence-type=transcript locus=Glyma.03g004200 ID=Glyma.03g004200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CATGATAATTTGATACAATTTCCTCTCATTCGTGATAAAAAATAAAATAAAATACATTTGCAGGCAATTTTTCTTTGGTTTGGTTGCATCTTTTGATCTGATCAACAAGTTTGAGAATTCAGTTTGGGAAAGGCCATTCCTCTTTAGTACAAAACAGATTGAGGGTGCCTTTGTGCTGATGGCCACTAATGAAAATCTTCCACCAAATGTAATTAAGCAACTTGCCAAGGAGTTGAAAAGTCTTGATGAATCCCCTCCTGAGGGCATTAAGGTTGTGGTAAATGATGATGATTTTTCGACAATATTTTCTGACATTGAAGGCCCAGCTGGAACTCCTTATGAGAATGGAGTTTTCCGAATGAAGCTGTTGCTGTCTCATGATTTCCCGCATTCTCCACCTAAAGGTTTTTTCTTGACTAAGATTTTCCATCCAAACATTGCAAACAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTTCCTGAATCAGCTCTAAATGAACAGGCTGGCAAAATGCTGCTTGAAAATTATGAGGAGTATGCTAGACATGCTAGGCTTTACACCGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGCGGAGCTATATCTGAATCAACAACTGCTCTGAATGTGGATCAGACAAACACCTCTGTGATTAGTGCTGACATCAAAACCACACCGGCGAGTGCTGCATTGCCAGCAGCCACCGCAACAAGAGGAAATAATCAGGAACAGGCAGCAGCGGCTGTTAATGGTTCTAATGCTGCCGCTACAGTCATTTCTGCTGCTGCTTCTGCACCCCAAAAGAAGGAAGGTGGACAAGCAAAAGCTCAGGTGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAATAAAATTGTTCAATTATTGATGTTTTTTTTAATTGTGTCTTAGTTTTACAATTTGATAGAGAAAGAGGAAGGAGTGGAGATATGGTCTCCTGGGTTCAACATTTGTTTTATATAATGAATTAGTAATTTCTTGTTAGGAGTAAATGGATGAAATTGAACTTGTTGTCTTTGGACTTGTGTTATACTCTTTGGTAAAATATTGATCTTTTAGGGAAAGAATGCTCTATAAGTAGCGGTAGACTTAAGTTAGGTTATTTTTGGATTCAACTCATTTATGAAAATGGGATTAAAAATTTTCTTTTGAATTCCAA

Coding sequences of Glyma.03g004200

Limit To All Plant Sequences

>Glyma.03g004200.1 sequence-type=CDS polypeptide=Glyma.03g004200.1.p locus=Glyma.03g004200 ID=Glyma.03g004200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACTAATGAAAATCTTCCACCAAATGTAATTAAGCAACTTGCCAAGGAGTTGAAAAGTCTTGATGAATCCCCTCCTGAGGGCATTAAGGTTGTGGTAAATGATGATGATTTTTCGACAATATTTTCTGACATTGAAGGCCCAGCTGGAACTCCTTATGAGAATGGAGTTTTCCGAATGAAGCTGTTGCTGTCTCATGATTTCCCGCATTCTCCACCTAAAGGTTTTTTCTTGACTAAGATTTTCCATCCAAACATTGCAAACAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTTCCTGAATCAGCTCTAAATGAACAGGCTGGCAAAATGCTGCTTGAAAATTATGAGGAGTATGCTAGACATGCTAGGCTTTACACCGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGCGGAGCTATATCTGAATCAACAACTGCTCTGAATGTGGATCAGACAAACACCTCTGTGATTAGTGCTGACATCAAAACCACACCGGCGAGTGCTGCATTGCCAGCAGCCACCGCAACAAGAGGAAATAATCAGGAACAGGCAGCAGCGGCTGTTAATGGTTCTAATGCTGCCGCTACAGTCATTTCTGCTGCTGCTTCTGCACCCCAAAAGAAGGAAGGTGGACAAGCAAAAGCTCAGGTGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAA

>Glyma.03g004200.2 sequence-type=CDS polypeptide=Glyma.03g004200.2.p locus=Glyma.03g004200 ID=Glyma.03g004200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCTGTTGCTGTCTCATGATTTCCCGCATTCTCCACCTAAAGGTTTTTTCTTGACTAAGATTTTCCATCCAAACATTGCAAACAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTTCCTGAATCAGCTCTAAATGAACAGGCTGGCAAAATGCTGCTTGAAAATTATGAGGAGTATGCTAGACATGCTAGGCTTTACACCGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGCGGAGCTATATCTGAATCAACAACTGCTCTGAATGTGGATCAGACAAACACCTCTGTGATTAGTGCTGACATCAAAACCACACCGGCGAGTGCTGCATTGCCAGCAGCCACCGCAACAAGAGGAAATAATCAGGAACAGGCAGCAGCGGCTGTTAATGGTTCTAATGCTGCCGCTACAGTCATTTCTGCTGCTGCTTCTGCACCCCAAAAGAAGGAAGGTGGACAAGCAAAAGCTCAGGTGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAA

>Glyma.03g004200.3 sequence-type=CDS polypeptide=Glyma.03g004200.3.p locus=Glyma.03g004200 ID=Glyma.03g004200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACTAATGAAAATCTTCCACCAAATGTAATTAAGCAACTTGCCAAGGAGTTGAAAAGTCTTGATGAATCCCCTCCTGAGGGCATTAAGGTTGTGGTAAATGATGATGATTTTTCGACAATATTTTCTGACATTGAAGGCCCAGCTGGAACTCCTTATGAGAATGGAGTTTTCCGAATGAAGCTGTTGCTGTCTCATGATTTCCCGCATTCTCCACCTAAAGGTTTTTTCTTGACTAAGATTTTCCATCCAAACATTGCAAACAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTTCCTGAATCAGCTCTAAATGAACAGGCTGGCAAAATGCTGCTTGAAAATTATGAGGAGTATGCTAGACATGCTAGGCTTTACACCGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGCGGAGCTATATCTGAATCAACAACTGCTCTGAATGTGGATCAGACAAACACCTCTGTGATTAGTGCTGACATCAAAACCACACCGGCGAGTGCTGCATTGCCAGCAGCCACCGCAACAAGAGGAAATAATCAGGAACAGGCAGCAGCGGCTGTTAATGGTTCTAATGCTGCCGCTACAGTCATTTCTGCTGCTGCTTCTGCACCCCAAAAGAAGGAAGGTGGACAAGCAAAAGCTCAGGTGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAA

Predicted protein sequences of Glyma.03g004200

Limit To All Plant Sequences

>Glyma.03g004200.1.p sequence-type=predicted peptide transcript=Glyma.03g004200.1 locus=Glyma.03g004200 ID=Glyma.03g004200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATNENLPPNVIKQLAKELKSLDESPPEGIKVVVNDDDFSTIFSDIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGFFLTKIFHPNIANNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARLYTGIHAKPKPKFKSGAISESTTALNVDQTNTSVISADIKTTPASAALPAATATRGNNQEQAAAAVNGSNAAATVISAAASAPQKKEGGQAKAQVDKKKIDARKKSLKRL*

>Glyma.03g004200.2.p sequence-type=predicted peptide transcript=Glyma.03g004200.2 locus=Glyma.03g004200 ID=Glyma.03g004200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKLLLSHDFPHSPPKGFFLTKIFHPNIANNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARLYTGIHAKPKPKFKSGAISESTTALNVDQTNTSVISADIKTTPASAALPAATATRGNNQEQAAAAVNGSNAAATVISAAASAPQKKEGGQAKAQVDKKKIDARKKSLKRL*

>Glyma.03g004200.3.p sequence-type=predicted peptide transcript=Glyma.03g004200.3 locus=Glyma.03g004200 ID=Glyma.03g004200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATNENLPPNVIKQLAKELKSLDESPPEGIKVVVNDDDFSTIFSDIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGFFLTKIFHPNIANNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARLYTGIHAKPKPKFKSGAISESTTALNVDQTNTSVISADIKTTPASAALPAATATRGNNQEQAAAAVNGSNAAATVISAAASAPQKKEGGQAKAQVDKKKIDARKKSLKRL*

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