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Report for Sequence Feature Glyma.03g004100

Feature Type:gene_model
Chromosome:Gm03
Start:364853
stop:366774
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g004100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G27030.3AT calmodulin 5 JGI N/AIEA
GO:0005509GO-mf calcium ion binding EnsemblGenomesN/AIEA
GO:0005509GO-mf calcium ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0027 KOG Calmodulin and related proteins (EF-Hand superfamily) JGI N/AIEA
PTHR23050Panther CALCIUM BINDING PROTEIN JGI N/AIEA
PTHR23050:SF20Panther AT16150P-RELATED JGI N/AIEA
PF00036PFAM EF hand JGI N/AIEA

Proteins Associated with Glyma.03g004100
LocusGene SymbolProtein Name
SCAM-1 calmodulin

Expression Patterns of Glyma.03g004100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g004100 not represented in the dataset
Glyma.03g004100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03g004100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g00640 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g004100
>Glyma.03g004100.1 sequence-type=CDS polypeptide=Glyma.03g004100.1.p locus=Glyma.03g004100 ID=Glyma.03g004100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGATCAACTCACCGATGAACAGATCTCGGAGTTCAAGGAAGCCTTCAGTTTGTTCGATAAGGATGGCGATGGTTGCATCACAACAAAGGAGCTTGGGACTGTTATGCGTTCGTTGGGTCAGAATCCAACAGAGGCTGAGCTCCAAGACATGATCAATGAAGTAGATGCTGATGGGAATGGCACCATTGACTTCCCTGAGTTCTTGAACCTCATGGCTAGAAAGATGAAGGACACTGATTCTGAGGAGGAGCTGAAAGAGGCGTTCCGAGTGTTTGACAAGGACCAGAATGGGTTCATTTCTGCTGCTGAGCTCCGCCATGTGATGACCAACCTTGGGGAGAAGCTCACTGATGAAGAGGTTGATGAGATGATTCGAGAGGCTGATGTCGATGGCGACGGCCAAATAAACTACGAGGAGTTTGTTAAGGTCATGATGGCCAAGTGA
Predicted protein sequences of Glyma.03g004100
>Glyma.03g004100.1.p sequence-type=predicted peptide transcript=Glyma.03g004100.1 locus=Glyma.03g004100 ID=Glyma.03g004100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADQLTDEQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK*






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